ArticleProceedings of the National Academy of Sciences of the United States of America1998
Functional genomics: probing plant gene function and expression with transposons.
Article in Proceedings of the National Academy of Sciences of the United States of America, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
52 citing papers in PubMed.
- Alkaline stress reduces root waving by regulating PIN7 vacuolar transport.Frontiers in plant science · 2022Article
- Next Generation Sequencing Based Forward Genetic Approaches for Identification and Mapping of Causal Mutations in Crop Plants: A Comprehensive Review.Plants (Basel, Switzerland) · 2020Review
- Direct and tunable modulation of protein levels in rice and wheat with a synthetic small molecule.Plant biotechnology journal · 2018Article
- RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary.Plant & cell physiology · 2014Article
- A conserved rubredoxin is necessary for photosystem II accumulation in diverse oxygenic photoautotrophs.The Journal of biological chemistry · 2013Article
- Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2, and -3 are the dominant paralogs.The Plant cell · 2012Article
- Arabidopsis peroxidase AtPRX53 influences cell elongation and susceptibility to Heterodera schachtii.Plant signaling & behavior · 2011Article
- Pathway for lipid A biosynthesis in Arabidopsis thaliana resembling that of Escherichia coli.Proceedings of the National Academy of Sciences of the United States of America · 2011Article
- Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean.Plant physiology · 2011Article
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.Plant physiology · 2011Article
- Silencing GhNDR1 and GhMKK2 compromises cotton resistance to Verticillium wilt.The Plant journal : for cell and molecular biology · 2011Article
- Perspectives on Systematic Analyses of Gene Function in Arabidopsis thaliana: New Tools, Topics and Trends.Current genomics · 2011Article
- RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function.Plant & cell physiology · 2011Article
- The Arabidopsis thylakoid protein PAM68 is required for efficient D1 biogenesis and photosystem II assembly.The Plant cell · 2010Article
- A candidate gene OsAPC6 of anaphase-promoting complex of rice identified through T-DNA insertion.Functional & integrative genomics · 2010Article
- Molecular characterization, expression pattern, and function analysis of the OsBC1L family in rice.Plant molecular biology · 2009Article
- Deletion-based reverse genetics in Medicago truncatula.Plant physiology · 2009Article
- A geminiviral amplicon (VA) derived from Tomato leaf curl virus (ToLCV) can replicate in a wide variety of plant species and also acts as a VIGS vector.Virology journal · 2009Article
- Phenome analysis in plant species using loss-of-function and gain-of-function mutants.Plant & cell physiology · 2009Review
- Functional characterization of phospholipid N-methyltransferases from Arabidopsis and soybean.The Journal of biological chemistry · 2009Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
1 author.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Transposable elements provide a convenient and flexible means to disrupt plant genes, so allowing their function to be assessed. By engineering transposons to carry reporter genes and regulatory signals, the expression of target genes can be monitored and to some extent manipulated. Two strategies for using transposons to assess gene function are outlined here: First, the PCR can be used to identify plants that carry insertions into specific genes from among pools of heavily mutagenized individuals (site-selected transposon mutagenesis). This method requires that high copy transposons be used and that a relatively large number of reactions be performed to identify insertions into genes of interest. Second, a large library of plants, each carrying a unique insertion, can be generated. Each insertion site then can be amplified and sequenced systematically. These two methods have been demonstrated in maize, Arabidopsis, and other plant species, and the relative merits of each are discussed in the context of plant genome research.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.