ArticleGenetics1998
Sequence organization and conservation in sh2/a1-homologous regions of sorghum and rice.
Article in Genetics, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
47 citing papers in PubMed, 125 citations in OpenAlex.
- Integrated analysis of metabolome and transcriptome reveals key candidate genes involved in flavonoid biosynthesis in Pinellia ternata under heat stress.Journal of plant research · 2023Article
- Article
- The Evolutionary Patterns of Genome Size in Ensifera (Insecta: Orthoptera).Frontiers in genetics · 2021Article
- Nucleotide variations of3 Biotech · 2020Article
- cDNA-AFLP analysis on bolting or flowering of flowering Chinese cabbage and molecular characteristics of BrcuDFR-like/BrcuAXS gene.Molecular biology reports · 2012Article
- A guided tour of large genome size in animals: what we know and where we are heading.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2011Review
- Syntenic relationships between cucumber (Cucumis sativus L.) and melon (C. melo L.) chromosomes as revealed by comparative genetic mapping.BMC genomics · 2011Article
- Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes.Proceedings of the National Academy of Sciences of the United States of America · 2009Article
- Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type).Genetics · 2007Article
- Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium.Genome research · 2006Article
- Article
- Fertility restorer locus Rf1 [corrected] of sorghum (Sorghum bicolor L.) encodes a pentatricopeptide repeat protein not present in the colinear region of rice chromosome 12.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
- Genetic mapping of expressed sequences in onion and in silico comparisons with rice show scant colinearity.Molecular genetics and genomics : MGG · 2005Article
- Identification of a gene in the process of being lost from the genus Agrostis.Plant physiology · 2005Article
- Cis-effects on meiotic recombination across distinct a1-sh2 intervals in a common Zea genetic background.Genetics · 2005Article
- Targeting the aluminum tolerance gene Alt3 region in rye, using rice/rye micro-colinearity.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
- Evaluation of five ab initio gene prediction programs for the discovery of maize genes.Plant molecular biology · 2005Article
- Article
- Comparative sequence analysis of the region harboring the hardness locus in barley and its colinear region in rice.Plant physiology · 2004Article
- Incongruent patterns of local and global genome size evolution in cotton.Genome research · 2004Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Previously, we have demonstrated microcolinearity of gene composition and orientation in sh2/a1-homologous regions of the rice, sorghum, and maize genomes. However, the sh2 and a1 homologues are only about 20 kb apart in both rice and sorghum, while they are separated by about 140 kb in maize. In order to further define sequence organization and conservation in sh2/a1-homologous regions, we have completely sequenced a 42,446-bp segment of sorghum DNA. Four genes were identified: a homologue of sh2, two homologues of a1, and a putative transcriptional regulatory gene. A solo long terminal repeat of the retroelement Leriathan was detected between the two a1 homologues, and eight miniature inverted repeat transposable elements were found in this region. Comparison of the sorghum sequence with the sequence of the homologous segment from rice indicated that only the identified genes were evolutionarily conserved between these two species, which have evolved independently for over 50 million years. The introns of the a1 homologues have evolved faster than the introns of the sh2 homologue. The a1 tandem duplication appears to be an ancient event that may have preceded the ancestral divergence of maize, sorghum, and rice.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.