Evidence map›Paper›PMID 9463387›Full record

ArticleThe EMBO journal1998

The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively.

H Y Liu, V Badarinarayana, D C Audino, J Rappsilber, M Mann, C L Denis

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed
10.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 208 citations in OpenAlex.

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46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

H Y LiuDepartment of Biochemistry and Molecular Biology, University of New Hampshire, Durham 03824, USA.
V Badarinarayana
D C Audino
J Rappsilber
M Mann
C L Denis
University of New Hampshire · US

Funding

YEAST GENES INVOLVED IN GENERAL TRANSCRIPTIONAL CONTROLR01GM041215 · NIGMS · UNIVERSITY OF NEW HAMPSHIRE · PI DENIS, CLYDE L · 1990 to 2003
$1.2M
NIGMS NIH HHS GM41215
6 · The paper itself

Abstract

The CCR4 transcriptional regulatory complex consisting of CCR4, CAF1, DBF2 and other unidentified factors is one of several groups of proteins that affect gene expression. Using mass spectrometry, we have identified the 195, 185 and 116 kDa species which are part of the CCR4 complex. The 195 and 185 kDa proteins were found to be NOT1 and the 116 kDa species was identical to NOT3. NOT1, 2, 3 and 4 proteins are part of a regulatory complex that negatively affects transcription. All four NOT proteins were found to co-immunoprecipitate with CCR4 and CAF1, and NOT1 co-purified with CCR4 and CAF1 through three chromatographic steps in a complex estimated to be 1.2x10(6) Da in size. Mutations in the NOT genes affected many of the same genes and processes that are affected by defects in the CCR4 complex components, including reduction in ADH2 derepression, defective cell wall integrity and increased sensitivity to monoand divalent ions. Similarly, ccr4, caf1 and dbf2 alleles negatively regulated FUS1-lacZ expression, as do defects in the NOT genes. These results indicate that the NOT proteins are physically and functionally part of the CCR4 complex which forms a unique and novel complex that affects transcription both positively and negatively.

Indexed as

Gene Expression Regulation, FungalRibonucleasesSaccharomyces cerevisiae ProteinsAllelesCell Cycle ProteinsFungal ProteinsMolecular WeightMutationPhenotypeRepressor ProteinsSaccharomyces cerevisiaeTranscription FactorsUbiquitin-Protein LigasesCCR4 protein, S cerevisiaeCDC36 protein, S cerevisiaeCDC39 protein, S cerevisiaeCell Cycle ProteinsFungal ProteinsMOT2 protein, S cerevisiaePOP2 protein, S cerevisiaeRepressor ProteinsRibonucleasesSaccharomyces cerevisiae ProteinsTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID9463387
PMCPMC1170458
OpenAlexW2004368359

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.