Evidence map›Paper›PMID 9463313›Full record

ArticleAmerican journal of human genetics1998

Germ-line mutational analysis of the TSC2 gene in 90 tuberous-sclerosis patients.

K S Au, J A Rodriguez, J L Finch, K A Volcik, E S Roach, M R Delgado, E Rodriguez, H Northrup

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 119 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Missense mutations to the TSC1 gene cause tuberous sclerosis complex.European journal of human genetics : EJHG · 2009
    Article
  11. Computational Systems Bioinformatics and Bioimaging for Pathway Analysis and Drug Screening.Proceedings of the IEEE. Institute of Electrical and Electronics Engineers · 2008
    Article
  12. Article
  13. Review
  14. Signaling by target of rapamycin proteins in cell growth control.Microbiology and molecular biology reviews : MMBR · 2005
    Review
  15. Article
  16. Article
  17. Neurologic manifestations of tuberous sclerosis complex.Current neurology and neuroscience reports · 2002
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

K S AuDepartment of Pediatrics, University of Texas Medical School, Houston, TX 77030, USA.
J A Rodriguez
J L Finch
K A Volcik
E S Roach
M R Delgado
E Rodriguez
H Northrup
The University of Texas Health Science Center at Houston · USTexas Scottish Rite Hospital for Children · USThe University of Texas at Austin · US

Funding

NINDS NIH HHS NS32300-02
6 · The paper itself

Abstract

Ninety patients with tuberous-sclerosis complex (TSC) were tested for subtle mutations in the TSC2 gene, by means of single-strand conformational analysis (SSCA) of genomic DNA. Patients included 56 sporadic cases and 34 familial probands. For all patients, SSCA was performed for each of the 41 exons of the TSC2 gene. We identified 32 SSCA changes, 22 disease-causing mutations, and 10 polymorphic variants. Interestingly, we detected mutations at a much higher frequency in the sporadic cases (32%) than in the multiplex families (9%). Among the eight families for which linkage to the TSC2 region had been determined, only one mutation was found. Mutations were distributed equally across the gene; they included 5 deletions, 3 insertions, 10 missense mutations, 2 nonsense mutations, and 2 tandem duplications. We did not detect an increase in mutations either in the GTPase-activating protein (GAP)-related domains of TSC2 or in the activating domains that have been identified in rat tuberin. We did not detect any mutations in the exons (25 and 31) that are spliced out in the isoforms. There was no evidence for correspondence between variability of phenotype and type of mutation (missense versus early termination). Diagnostic testing will be difficult because of the genetic heterogeneity of TSC (which has at least two causative genes: TSC1 and TSC2), the large size of the TSC2 gene, and the variety of mutations. More than half of the mutations that we identified (missense, small in-frame deletion, and tandem duplication) are not amenable to the mutation-detection methods, such as protein-truncation testing, that are commonly employed for genes that encode proteins with tumor-suppressor function.

Indexed as

MutationPolymorphism, GeneticAdolescentAdultAnimalsBase SequenceBrainChildChild, PreschoolCodonDNA Transposable ElementsExonsFamilyFrameshift MutationGenes, Tumor SuppressorGenetic LinkageCodonDNA Transposable ElementsGTPase-Activating ProteinsProteinsRepressor ProteinsTSC2 protein, humanTsc2 protein, ratTuberous Sclerosis Complex 2 ProteinTumor Suppressor Proteins

Identifiers

PMID9463313
PMCPMC1376882
OpenAlexW1976282699

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.