Evidence map›Paper›PMID 9461558›Full record

ArticleThe Biochemical journal1998

Effects of nutrient deprivation and differentiation on the expression of growth-arrest genes (gas and gadd) in F9 embryonal carcinoma cells.

J V Fleming, S M Hay, D N Harries, W D Rees

Abstract read
In one paragraph

Article in The Biochemical journal, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Expression pattern of circulating long non-coding RNAArchives of medical science : AMS · 2026
    Article
  3. Review
  4. Expression Profiles of Long Non-Coding RNADiagnostics (Basel, Switzerland) · 2021
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Amino acid regulation of gene expression.The Biochemical journal · 2000
    Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

J V FlemingThe Rowett Research Institute, Greenburn Road, Bucksburn, Aberdeen AB21 9SB, Scotland.
S M Hay
D N Harries
W D Rees

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The growth-arrest genes (gas and gadd) are widely expressed during mammalian embryogenesis and may be useful as markers of nutritional stress in the embryo. F9 embryonal carcinoma cells have been used to characterize the effect of serum or amino acid deficiency on growth-arrest gene expression in a differentiating embryonic cell. The differentiation markers, homeobox B2 (HoxB2), collagen type IV and laminin B2, were not induced by growth arrest. Treatment with all-trans retinoic acid (RA) produced a dose-dependent increase in alkaline phosphatase activity, which was unchanged in lysine-deficient medium and reduced in low-serum medium. Low-serum medium also reduced HoxB2 expression. There was a transient 2-6-fold increase in mRNAs for C/EBP-beta, gadd153/CHOP-10 and gas5 genes 24 h after transfer to amino-acid-deficient media. The mRNAs for the gas2 and gas6 genes began to rise slowly by 5-10-fold after a delay of approx. 24 h. The transient increases did not occur in low-serum medium where there was a much smaller and slower increase. Differentiation caused 1-2-fold increases in gas2, gas3 and gas6 mRNA levels. The transient overexpression of gas5, gadd153/CHOP-10 and CCAAT-enhancer-binding protein-beta, and the later expression of gas6 mRNAs in response to amino acid deficiency, were not affected by differentiation. RA treatment increased the expression of gas3 and caused gas2 to be transiently overexpressed in amino-acid-deficient medium. Differentiation in serum-deficient medium did not significantly alter the levels of the growth-arrest gene mRNAs. These results show that in F9 cells the growth-arrest genes are expressed sequentially as a result of nutrient stress.

Indexed as

CCAAT-Enhancer-Binding ProteinsCell DivisionGene Expression Regulation, DevelopmentalGene Expression Regulation, NeoplasticIntercellular Signaling Peptides and ProteinsNutritional Physiological PhenomenaRNA, Small NucleolarAmino AcidsAnimalsBiomarkersCell AggregationCell DifferentiationCulture MediaDNA-Binding ProteinsGrowth Arrest-Specific Protein 6Membrane ProteinsAmino AcidsBiomarkersCCAAT-Enhancer-Binding ProteinsCulture MediaDdit3 protein, mouseDNA-Binding ProteinsGas2 protein, mouseGrowth Arrest-Specific Protein 6growth arrest specific transcript 5Intercellular Signaling Peptides and ProteinsMembrane ProteinsMicrofilament ProteinsProteinsRNA, Small NucleolarTranscription Factor CHOPTranscription FactorsTretinoin

Identifiers

PMID9461558
PMCPMC1219175

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.