Evidence map›Paper›PMID 9461467›Full record

ArticleNucleic acids research1998

Nucleosomes are not necessary for promoter-proximal pausing in vitro on the Drosophila hsp70 promoter.

L R Benjamin, D S Gilmour

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

L R BenjaminCenter for Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA.
D S Gilmour
Pennsylvania State University · US

Funding

POTENTIATED STATE OF THE HSP70 HEAT SHOCK GENER01GM047477 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI GILMOUR, DAVID SCOTT · 1992 to 2022
$6.7M
NIGMS NIH HHS GM47477
6 · The paper itself

Abstract

RNA polymerase II has been found to pause stably on several metazoan genes in a promoter-proximal region located 20-40 nt downstream from the start site of transcription. Escape of polymerase from this paused state has been proposed to be a rate limiting step in transcription of some genes. A study of the human hsp70 promoter showed that a nucleosome positioned downstream from the transcription start was a key component in establishing a stably paused polymerase in one cell-free system. We tested whether these results could be extended to the Drosophila hsp70 promoter in a Drosophila cell-free system and found that polymerase paused stably on the promoter even when the length of DNA downstream from the transcription start was not sufficient for assembly of a nucleosome. Our results indicate that a downstream nucleosome is not a universal requirement for stably pausing RNA polymerase in the promoter-proximal region.

Indexed as

Genes, InsectPromoter Regions, GeneticAnimalsBase SequenceCell-Free SystemDNADNA PrimersDrosophilaHSP70 Heat-Shock ProteinsHumansInsect ProteinsKineticsNucleosomesRNA Polymerase IITranscription, GeneticDNADNA PrimersHSP70 Heat-Shock ProteinsInsect ProteinsNucleosomesRNA Polymerase II

Identifiers

PMID9461467
PMCPMC147342
OpenAlexW2156520424

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.