Evidence map›Paper›PMID 9447979›Full record

ArticleMolecular and cellular biology1998

GTP hydrolysis is not important for Ypt1 GTPase function in vesicular transport.

C J Richardson, S Jones, R J Litt, N Segev

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  6. Ypt/Rab GTPases: principles learned from yeast.Critical reviews in biochemistry and molecular biology · 2015
    Review
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  8. Article
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  15. Review
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  18. Article
  19. Rabphilin potentiates soluble N-ethylmaleimide sensitive factor attachment protein receptor function independently of rab3.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2001
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

C J RichardsonDepartment of Biochemistry and Molecular Biology, The University of Chicago, Illinois 60637, USA.
S Jones
R J Litt
N Segev
University of Chicago · US

Funding

Ruth L. Kirschstein National Research Service Award (NRSA) Institutional Research Training Grant (Parent T32)T32HD007009 · NICHD · UNIVERSITY OF CHICAGO · PI NANCY B SCHWARTZ · 1985 to 2026
$13.0M
YPTL GTPASE AND VESICULAR TRANSPORTR01GM045444 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI SEGEV, NAVA · 1992 to 2020
$6.4M
PHARMACOLOGICAL SCIENCES TRAINING PROGRAMT32GM007151 · NIGMS · UNIVERSITY OF CHICAGO · PI MILLER, RICHARD J · 1985 to 2000
$197k
NICHD NIH HHS 5T32 HD 07009NICHD NIH HHS T32 HD007009NIGMS NIH HHS 5T32 GM 07151-20NIGMS NIH HHS GM45444NIGMS NIH HHS R01 GM045444NIGMS NIH HHS T32 GM007151
6 · The paper itself

Abstract

GTPases of the Ypt/Rab family play a key role in the regulation of vesicular transport. Their ability to cycle between the GTP- and the GDP-bound forms is thought to be crucial for their function. Conversion from the GTP- to the GDP-bound form is achieved by a weak endogenous GTPase activity, which can be stimulated by a GTPase-activating protein (GAP). Current models suggest that GTP hydrolysis and GAP activity are essential for vesicle fusion with the acceptor compartment or for timing membrane fusion. To test this idea, we inactivated the GTPase activity of Ypt1p by using the Q67L mutation, which targets a conserved residue that helps catalyze GTP hydrolysis in Ras. We demonstrate that the mutant Ypt1-Q67L protein is severely impaired in its ability to hydrolyze GTP both in the absence and in the presence of GAP and consequently is restricted mostly to the GTP-bound form. Surprisingly, a strain with ypt1-Q67L as the only YPT1 gene in the cell has no observable growth phenotypes at temperatures ranging from 14 to 37 degrees C. In addition, these mutant cells exhibit normal rates of secretion and normal membrane morphology as determined by electron microscopy. Furthermore, the ypt1-Q67L allele does not exhibit dominant phenotypes in cell growth and secretion when overexpressed. Together, these results lead us to suggest that, contrary to current models for Ypt/Rab function, GTP hydrolysis is not essential either for Ypt1p-mediated vesicular transport or as a timer to turn off Ypt1p-mediated membrane fusion but only for recycling of Ypt1p between compartments. Finally, the ypt1-Q67L allele, like the wild type, is inhibited by dominant nucleotide-free YPT1 mutations. Such mutations are thought to exert their dominant phenotype by sequestration of the guanine nucleotide exchange factor (GNEF). These results suggest that the function of Ypt1p in vesicular transport requires not only the GTP-bound form of the protein but also the interaction of Ypt1p with its GNEF.

Indexed as

rab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsBiological TransportFungal ProteinsGTP-Binding ProteinsGTP PhosphohydrolasesGuanosine TriphosphateHydrolysisMutagenesis, Site-DirectedOrganellesProtein PrenylationFungal ProteinsGTP-Binding ProteinsGTP PhosphohydrolasesGuanosine Triphosphaterab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsYPT1 protein, S cerevisiae

Identifiers

PMID9447979
PMCPMC108794
OpenAlexW2158875314

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.