Evidence map›Paper›PMID 9436906›Full record

ArticleRNA (New York, N.Y.)1998

Effect of frameshift-inducing mutants of elongation factor 1alpha on programmed +1 frameshifting in yeast.

P J Farabaugh, A Vimaladithan

Open access · greenAbstract readComparative Study
In one paragraph

Article in RNA (New York, N.Y.), 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

P J FarabaughDepartment of Biological Sciences, University of Maryland Baltimore County, Baltimore 21250, USA. farabaug@umbc.edu
A Vimaladithan
University of Maryland, Baltimore County · US

Funding

The genetics of ribosomal reading frame maintenanceR01GM029480 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI FARABAUGH, PHILIP JAMES · 1985 to 2010
$2.7M
Molecular genetics of translational accuracyR56GM029480 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI FARABAUGH, PHILIP JAMES · 2007 to 2007
$323k
NIGMS NIH HHS GM29480
6 · The paper itself

Abstract

The translational apparatus very efficiently eliminates errors that would cause a spontaneous shift in frames. The probability of frameshifting can be increased dramatically by either cis or trans-acting factors. Programmed translational frameshift sites are cis-acting sequences that greatly increase the frequency of such errors, at least in part by causing a transient translational pause. Pausing during programmed +1 frameshifts occurs because of slow recognition of the codon following the last read in the normal frame. Frameshifting can also be elevated in strains carrying mutations in the homologous elongation factors EF-Tu in bacteria, and EF-1alpha in the yeast Saccharomyces cerevisiae. This phenotype implies that the factors contribute to frame maintenance. Because EF-Tu/EF-1alpha modulate the kinetics of decoding, it is possible that the frameshift suppressor forms of the factors transiently slow normal decoding, allowing spontaneous frameshifting to occur more efficiently, resulting in phenotypic suppression. We have used a set of frameshift reporter plasmids to test the effect of suppressor forms of EF-1alpha on constructs that differ widely in the efficiency with which they stimulate +1 shifting. When these results were compared to the effect of increased translational pausing, it was apparent that the mutations affecting EF-1alpha do not simply prolong the translational pause. Rather, they appear to generally increase the likelihood of frame errors, apparently by affecting the error correction mechanism of the ribosome.

Indexed as

Frameshifting, RibosomalMutationCodonModels, MolecularPeptide Elongation Factor 1Peptide Elongation FactorsRetroelementsRibosomesSaccharomyces cerevisiaeCodonPeptide Elongation Factor 1Peptide Elongation FactorsRetroelements

Identifiers

PMID9436906
PMCPMC1369594
OpenAlexW2168293208

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.