Evidence map›Paper›PMID 9436903›Full record

ArticleRNA (New York, N.Y.)1998

Conservation of structure and subunit interactions in yeast homologues of splicing factor 3b (SF3b) subunits.

H Igel, S Wells, R Perriman, M Ares

Open access · greenAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. SF3b4: A Versatile Player in Eukaryotic Cells.Frontiers in cell and developmental biology · 2020
    Review
  4. Article
  5. Component of splicing factor SF3b plays a key role in translational control of polyribosomes on the endoplasmic reticulum.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Interactions of the yeast SF3b splicing factor.Molecular and cellular biology · 2005
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

H IgelCenter for the Molecular Biology of RNA, Biology Department, University of California at Santa Cruz, 95064, USA.
S Wells
R Perriman
M Ares
University of California, Santa Cruz · US

Funding

STRUCTURE/FUNCTION OF YEAST SMALL NUCLEAR RNPSR01GM040478 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI ARES, MANUEL · 1988 to 2021
$10.8M
NIGMS NIH HHS GM40478
6 · The paper itself

Abstract

Human SAP 49, a subunit of the multimeric splicing factor 3b (SF3b), contains two RNA recognition motifs (RRMs) and binds another SF3b subunit called SAP 145, whose yeast homologue is CUS1. Here we show that the predicted yeast open reading frame YOR319w (HSH49) encodes an essential yeast splicing factor. Using bacterially expressed proteins, we find that yeast HSH49 binds CUS1. Mutations that alter putative RNA-binding residues of either HSH49 RRM are lethal in vivo, but do not prevent binding to CUS1 in vitro, suggesting that the predicted RNA-binding surfaces of HSH49 are not required for interaction with CUS1. In vivo interaction tests show that HSH49 and CUS1 associate primarily through the N-terminal RRM of HSH49. Recombinant HSH49 protein has a general RNA-binding activity that does not require CUS1. The parallels in structure and interaction between two SF3b subunits from yeast implies that the mechanism of SF3b action is highly conserved.

Indexed as

Ribonucleoprotein, U2 Small NuclearRNA SplicingSaccharomyces cerevisiae ProteinsAmino Acid SequenceBinding SitesConserved SequenceFungal ProteinsMolecular Sequence DataRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, FungalRNA Splicing FactorsSaccharomyces cerevisiaeSequence Homology, Amino AcidCUS1 protein, S cerevisiaeFungal ProteinsHSH49 protein, S cerevisiaeRecombinant Fusion ProteinsRibonucleoprotein, U2 Small NuclearRNA-Binding ProteinsRNA, FungalRNA Splicing FactorsSaccharomyces cerevisiae ProteinsSF3B2 protein, humanSF3B4 protein, human

Identifiers

PMID9436903
PMCPMC1369591
OpenAlexW2166992176

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.