Evidence map›Paper›PMID 9414202›Full record

ArticleBiophysical journal1997

The effects of geometrical parameters on synaptic transmission: a Monte Carlo simulation study.

P J Kruk, H Korn, D S Faber

Abstract read
In one paragraph

Article in Biophysical journal, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Modification of the synaptic cleft under excitatory conditions.Frontiers in synaptic neuroscience · 2023
    Article
  3. Review
  4. Article
  5. Hydrodynamic flow in a synaptic cleft during exocytosis.European biophysics journal : EBJ · 2012
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Noradrenaline triggers multivesicular release at glutamatergic synapses in the hypothalamus.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2005
    Article
  13. Article
  14. Number and density of AMPA receptors in single synapses in immature cerebellum.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2005
    Article
  15. Kinetics of organic transformations under mild aqueous conditions: implications for the origin of life and its metabolism.Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life · 2004
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Persistent, exocytosis-independent silencing of release sites underlies homosynaptic depression at sensory synapses in Aplysia.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2002
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

P J KrukDepartment of Neurobiology and Anatomy, Allegheny University of the Health Sciences, Philadelphia, Pennsylvania 19129, USA.
H Korn
D S Faber

Funding

REGULATION OF TRANSMITTER RELEASE AT CENTRAL SYNAPSESR01NS021848 · NINDS · YESHIVA UNIVERSITY · PI FABER, DONALD S · 1986 to 1999
–
NINDS NIH HHS NS21848
6 · The paper itself

Abstract

Monte Carlo simulations of transmitter diffusion and its interactions with postsynaptic receptors have been used to study properties of quantal responses at central synapses. Fast synaptic responses characteristic of those recorded at glycinergic junctions on the teleost Mauthner cell (time to peak approximately 0.3-0.4 ms and decay time constant approximately 3-6 ms) served as the initial reference, and smaller contacts with fewer postsynaptic receptors were also modeled. Consistent with experimental findings, diffusion, simulated using a random walk algorithm and assuming a diffusion coefficient of 0.5-1.0 x 10(-5) cm2 s(-1), was sufficiently fast to account for transmitter removal from the synaptic cleft. Transmitter-receptor interactions were modeled as a two-step binding process, with the double-bound state having opened and closed conformations. Addition of a third binding step only slightly decreased response amplitude but significantly slowed both its rising and decay phases. The model allowed us to assess the sources of response variability and the likelihood of postsynaptic saturation as functions of multiple kinetic and spatial parameters. The method of nonstationary fluctuation analysis, typically used to estimate the number of functional channels at a synapse and single channel current, proved unreliable, presumably because the receptors in the postsynaptic matrix are not uniformly exposed to the same profile of transmitter concentration. Thus, the time course of the probability of channel opening most likely varies among receptors. Finally, possible substrates for phenomena of synaptic plasticity, such as long-term potentiation, were explored, including the diameter of the contact zone, defined by the region of pre- and postsynaptic apposition, the number and distribution of the receptors, and the degree of vesicle filling. Surprisingly, response amplitude is quite sensitive to the size of the receptor-free annulus surrounding the receptor cluster, such that expansion of the contact zone could produce an appreciable increase in quantal size, normally attributed to either the presence of more receptors or the release of more transmitter molecules.

Indexed as

Models, NeurologicalAlgorithmsAnimalsBinding SitesBiophysical PhenomenaBiophysicsComputer SimulationDiffusionKineticsMonte Carlo MethodNeuronal PlasticityNeurotransmitter AgentsQuantum TheoryReceptors, NeurotransmitterStochastic ProcessesSynapsesNeurotransmitter AgentsReceptors, Neurotransmitter

Identifiers

PMID9414202
PMCPMC1181193

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.