Evidence map›Paper›PMID 9407026›Full record

ArticleGenes & development1997

Histone acetyltransferases regulate HIV-1 enhancer activity in vitro.

P L Sheridan, T P Mayall, E Verdin, K A Jones

Abstract read
In one paragraph

Article in Genes & development, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed.

  1. Trial
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  11. Review
  12. The multifaceted nature of HIV latency.The Journal of clinical investigation · 2020
    Review
  13. Review
  14. Review
  15. Article
  16. HIV latency in isolated patient CD4Science translational medicine · 2018
    Article
  17. Review
  18. Article
  19. Article
  20. Review

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

P L SheridanThe Salk Institute for Biological Studies, La Jolla, California 92037-1099, USA.
T P Mayall
E Verdin
K A Jones

Funding

MOLECULAR MECHANISMS OF GENE EXPRESSION IN ANIMAL CELLSR01GM038166 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI JONES, KATHERINE A · 1987 to 1999
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NIGMS NIH HHS GM 38166
6 · The paper itself

Abstract

Specific inhibitors of histone deacetylase, such as trichostatin A (TSA) and trapoxin (TPX), are potent inducers of HIV-1 transcription in latently infected T-cell lines. Activation of the integrated HIV-1 promoter is accompanied by the loss or rearrangement of a positioned nucleosome (nuc-1) near the viral RNA start site. Here we show that TSA strongly induces HIV-1 transcription on chromatin in vitro, concomitant with an enhancer factor-assisted increase in the level of acetylated histone H4. TSA treatment, however, did not detectably alter enhancer factor binding or the positioning of nuc-1 on the majority of the chromatin templates indicating that protein acetylation and chromatin remodeling may be limiting steps that occur only on transcriptionally competent templates, or that remodeling of nuc-1 requires additional factors. To assess the number of active chromatin templates in vitro, transcription was limited to a single round with low levels of the detergent Sarkosyl. Remarkably, HIV-1 transcription on chromatin was found to arise from a small number of active templates that can each support nearly 100 rounds of transcription, and TSA increased the number of active templates in each round. In contrast, transcription on naked DNA was limited to only a few rounds and was not responsive to TSA. We conclude that HIV-1 enhancer complexes greatly facilitate transcription reinitiation on chromatin in vitro, and act at a limiting step to promote the acetylation of histones or other transcription factors required for HIV-1 enhancer activity.

Indexed as

HIV EnhancerPeptidesSaccharomyces cerevisiae ProteinsAcetyltransferasesAnimalsAnti-Bacterial AgentsCell-Free SystemChromatinDeoxyribonucleases, Type II Site-SpecificDNA-Binding ProteinsFungal ProteinsHistone AcetyltransferasesHistone Deacetylase InhibitorsHistone DeacetylasesHistonesHIV-1AcetyltransferasesAnti-Bacterial AgentsChromatinCTTAAG-specific type II deoxyribonucleasesDeoxyribonucleases, Type II Site-SpecificDNA-Binding ProteinsDNA modification methylase HindIIIFungal ProteinsHistone AcetyltransferasesHistone Deacetylase InhibitorsHistone DeacetylasesHistonesHydroxamic AcidsLymphoid Enhancer-Binding Factor 1NUC-1 protein, Neurospora crassaPeptidesSaccharomyces cerevisiae ProteinsSite-Specific DNA-Methyltransferase (Adenine-Specific)Transcription Factorstrapoxin Atrichostatin AUBP1 protein, human

Identifiers

PMID9407026
PMCPMC316802

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.