Evidence map›Paper›PMID 9405371›Full record

ArticleThe EMBO journal1997

Position-dependent and promoter-specific regulation of gene expression in Trypanosoma brucei.

D Horn, G A Cross

Abstract read
In one paragraph

Article in The EMBO journal, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 78 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. VEX1 controls the allelic exclusion required for antigenic variation in trypanosomes.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  9. Inositol phosphate pathway controls transcription of telomeric expression sites in trypanosomes.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  10. Review
  11. Article
  12. Antigenic variation in African trypanosomes.Molecular and biochemical parasitology · 2014
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

D HornLaboratory of Molecular Parasitology, The Rockefeller University, 1230 York Avenue, New York, NY 10021-6399, USA.
G A Cross
Rockefeller University · US

Funding

MOLECULAR GENETICS OF TRYPANOSOME ANTIGENIC VARIATIONR01AI021729 · NIAID · ROCKEFELLER UNIVERSITY · PI CROSS, GEORGE ALAN MARTIN · 1985 to 2011
$5.3M
MOLECULAR GENETICS OF TRYPANOSOME ANTIGENIC VARIATIONR37AI021729 · NIAID · ROCKEFELLER UNIVERSITY · PI CROSS, GEORGE ALAN MARTIN · 1988 to 1997
–
NIAID NIH HHS AI 21729
6 · The paper itself

Abstract

Trypanosoma brucei evades the mammalian immune response by a process of antigenic variation. This involves mutually exclusive and alternating expression of telomere-proximal variant surface glycoprotein genes (vsgs), which is controlled at the level of transcription. To examine transcription repression in T.brucei we inserted reporter genes, under the control of either rRNA or vsg expression site (ES) promoters, into various chromosomal loci. Position-dependent repression of both promoters was observed in the mammalian stage of the life cycle (bloodstream forms). Repression of promoters inserted into a silent ES was more pronounced closer to the telomere and was bi-directional. Transcription from both ES and rRNA promoters was also efficiently repressed at a non-telomeric vsg locus in bloodstream-form trypanosomes. In cultured tsetse fly midgut-stage (procyclic) trypanosomes, in which vsg is not normally expressed, all inserted rRNA promoters were derepressed but ES promoters remained silent. Our results suggest that vsg promoters and ectopic rRNA promoters in bloodstream-form T.brucei are restrained by position effects related to their proximity to vsgs or other features of the ES. Sequences present in rRNA promoters but absent from vsg ES promoters appear to be responsible for rRNA promoter-specific derepression in procyclic cells.

Indexed as

Gene Expression RegulationPromoter Regions, GeneticTranscription, GeneticAnimalsDNA, ProtozoanDNA, RibosomalLife Cycle StagesMammalsMutagenesis, InsertionalRestriction MappingRNA, RibosomalTelomereTransfectionTrypanosoma brucei bruceiVariant Surface Glycoproteins, TrypanosomaDNA, ProtozoanDNA, RibosomalRNA, RibosomalVariant Surface Glycoproteins, Trypanosoma

Identifiers

PMID9405371
PMCPMC1170342
OpenAlexW2105699548

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.