Evidence map›Paper›PMID 9396745›Full record

ArticleThe Journal of cell biology1997

Probing the architecture of a simple kinetochore using DNA-protein crosslinking.

C W Espelin, K B Kaplan, P K Sorger

Abstract read
In one paragraph

Article in The Journal of cell biology, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
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  7. Review
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  12. The centromeric nucleosome of budding yeast is perfectly positioned and covers the entire centromere.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  13. Scm3 is a centromeric nucleosome assembly factor.The Journal of biological chemistry · 2011
    Article
  14. Article
  15. Article
  16. Molecular structures and interactions in the yeast kinetochore.Cold Spring Harbor symposia on quantitative biology · 2010
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

C W EspelinDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
K B Kaplan
P K Sorger

Funding

BIOCHEMICAL AND GENETIC ANALYSIS OF YEAST KINETOCHORESR01GM051464 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SORGER, PETER KARL · 1994 to 2010
$3.9M
NIGMS NIH HHS GM51464NIGMS NIH HHS R01 GM051464
6 · The paper itself

Abstract

In budding yeast, accurate chromosome segregation requires that one and only one kinetochore assemble per chromosome. In this paper, we report the use of DNA-protein crosslinking and nondenaturing gel analysis to study the structure of CBF3, a four-protein complex that binds to the essential CDEIII region of Saccharomyces cerevisiae centromeres. We find that three subunits of CBF3 are in direct contact with CDEIII over a region of DNA that spans 80 bp. A highly asymmetric core complex containing p58(CTF13) p64(CEP3) and p110(NDC10) in direct contact with DNA forms at the genetically defined center of CDEIII. This core complex spans approximately 56 bp of CEN3. An extended complex comprising the core complex and additional DNA-bound p110(NDC10) also forms. It spans approximately 80 bp of DNA. CBF3 makes sequence-specific and -nonspecific contacts with DNA. Both contribute significantly to the energy of CBF3-DNA interaction. Moreover, important sequence-specific contacts are made with bases that are not conserved among yeast centromeres. These findings provide a foundation for understanding the organization of the CBF3-centromere complex, a structure that appears to initiate the formation of microtubule attachment sites at yeast kinetochores. These results also have implications for understanding centromere-binding proteins in higher cells.

Indexed as

Nuclear ProteinsSaccharomyces cerevisiae ProteinsBase SequenceBinding SitesChromosomes, FungalCross-Linking ReagentsDNA-Binding ProteinsDNA, FungalFungal ProteinsKinetochoresMacromolecular SubstancesModels, MolecularMolecular Sequence DataNucleic Acid ConformationProtein BindingSaccharomyces cerevisiaeCEP3 protein, S cerevisiaeCross-Linking ReagentsDNA-Binding ProteinsDNA, FungalFungal ProteinsMacromolecular SubstancesNuclear ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID9396745
PMCPMC2132615

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.