Evidence map›Paper›PMID 9391044›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1997

The C9 methyl group of retinal interacts with glycine-121 in rhodopsin.

M Han, M Groesbeek, T P Sakmar, S O Smith

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 68 citations in OpenAlex.

  1. Review
  2. Magic angle spinning NMR of G protein-coupled receptors.Progress in nuclear magnetic resonance spectroscopy · 2022
    Review
  3. Review
  4. Article
  5. Nucleotide Sugar Transporter SLC35 Family Structure and Function.Computational and structural biotechnology journal · 2019
    Review
  6. Article
  7. Retinal Flip in Rhodopsin Activation?Biophysical journal · 2015
    Article
  8. Uncovering the triggers for GPCR activation using solid-state NMR spectroscopy.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2015
    Article
  9. Review
  10. Article
  11. Article
  12. Structure and function of G protein-coupled receptors using NMR spectroscopy.Progress in nuclear magnetic resonance spectroscopy · 2010
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

M HanLaboratory of Molecular Biology and Biochemistry, The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.
M Groesbeek
T P Sakmar
S O Smith
Rockefeller University · US

Funding

Structure and Activation Mechanism of the Visual Pigment RhodopsinR01GM041412 · NIGMS · YALE UNIVERSITY · PI SMITH, STEVEN OWEN · 1989 to 2014
$4.4M
NIGMS NIH HHS GM 41412NIGMS NIH HHS R01 GM041412
6 · The paper itself

Abstract

The visual pigment rhodopsin is a prototypical G protein-coupled receptor. These receptors have seven transmembrane helices and are activated by specific receptor-ligand interactions. Rhodopsin is unusual in that its retinal prosthetic group serves as an antagonist in the dark in the 11-cis conformation but is rapidly converted to an agonist on photochemical cis to trans isomerization. Receptor-ligand interactions in rhodopsin were studied in the light and dark by regenerating site-directed opsin mutants with synthetic retinal analogues. A progressive decrease in light-dependent transducin activity was observed when a mutant opsin with a replacement of Gly121 was regenerated with 11-cis-retinal analogues bearing progressively larger R groups (methyl, ethyl, propyl) at the C9 position of the polyene chain. A progressive decrease in light activity was also observed as a function of increasing size of the residue at position 121 for both the 11-cis-9-ethyl- and the 11-cis-9-propylretinal pigments. In contrast, a striking increase of receptor activity in the dark-i.e., without chromophore isomerization-was observed when the molecular volume at either position 121 of opsin or C9 of retinal was increased. The ability of bulky replacements at either position to hinder ligand incorporation and to activate rhodopsin in the dark suggests a direct interaction between these two sites. A molecular model of the retinal-binding site of rhodopsin is proposed that illustrates the specific interaction between Gly121 and the C9 methyl group of 11-cis-retinal. Steric interactions in this region of rhodopsin are consistent with the proposal that movement of transmembrane helices 3 and 6 is concomitant with receptor activation.

Indexed as

NorisoprenoidsAnimalsBinding SitesCOS CellsGlycineMethylationModels, MolecularMutagenesis, Site-DirectedProtein ConformationRetinaldehydeRhodopsinRod OpsinsTerpenesbeta-iononeGlycineNorisoprenoidsRetinaldehydeRhodopsinRod OpsinsTerpenes

Identifiers

PMID9391044
PMCPMC28324
OpenAlexW2061163620

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.