Evidence map›Paper›PMID 9384588›Full record

ArticleThe EMBO journal1997

Using altered specificity Oct-1 and Oct-2 mutants to analyze the regulation of immunoglobulin gene transcription.

P C Shah, E Bertolino, H Singh

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  4. Tailoring the models of transcription.International journal of molecular sciences · 2013
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

P C ShahDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637, USA.
E Bertolino
H Singh
Howard Hughes Medical Institute · US

Funding

NIGMS NIH HHS GM08369
6 · The paper itself

Abstract

Oct-1 and Oct-2 represent the prototypical example of related transcription factors with identical DNA recognition properties. They bind functionally critical octamer elements found in diverse regulatory sequences. It has not been possible to determine directly if these factors are functionally redundant or selective when interacting with different regulatory sequences in the appropriate cell type. An equivalent pair of altered DNA-binding specificity mutants of Oct-1 and Oct-2 are used to examine their function from varied regulatory contexts in B cells. These factors function as redundant activators of immunoglobulin (Ig) gene promoters (Vkappa and VH) and a histone H2B promoter. The structural basis of redundancy resides in the highly conserved DNA-binding POU domain, because this domain of either protein can activate transcription from both Ig and H2B promoters. We find that the nature of a distal enhancer dictates the relative potency of Oct-1 versus Oct-2 bound to a promoter. Oct-1 preferentially stimulates transcription from a VH or Vkappa promoter in combination with enhancers from the IgH or Igkappa locus, respectively. In this context, the more potent action of Oct-1 is dependent on a region external to the POU domain. These results suggest that Oct-1 may be the critical regulator of Ig gene transcription during B cell development and provide an explanation for selective Ig isotype expression defects in Oct-2 and OCA-B null mice.

Indexed as

B-LymphocytesGene Expression Regulation, DevelopmentalGenes, ImmunoglobulinAnimalsDNA-Binding ProteinsEnhancer Elements, GeneticHistonesHost Cell Factor C1Immunoglobulin Heavy ChainsImmunoglobulin kappa-ChainsImmunoglobulin Variable RegionMiceMice, Mutant StrainsMutationOctamer Transcription Factor-1Octamer Transcription Factor-2DNA-Binding ProteinsHcfc1 protein, mouseHistonesHost Cell Factor C1Immunoglobulin Heavy ChainsImmunoglobulin kappa-ChainsImmunoglobulin Variable RegionOctamer Transcription Factor-1Octamer Transcription Factor-2Pou2af1 protein, mousePou2f1 protein, mousePou2f2 protein, mousePOU Domain FactorsTrans-ActivatorsTranscription Factors

Identifiers

PMID9384588
PMCPMC1170312
OpenAlexW2159040707

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.