Evidence map›Paper›PMID 9384587›Full record

ArticleThe EMBO journal1997

Cloning of an inr- and E-box-binding protein, TFII-I, that interacts physically and functionally with USF1.

A L Roy, H Du, P D Gregor, C D Novina, E Martinez, R G Roeder

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 193 citations in OpenAlex.

  1. Unraveling biomolecular interactions: a comprehensive review of the electromobility shift assay.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2025
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  5. Mechanisms of Binding Specificity among bHLH Transcription Factors.International journal of molecular sciences · 2021
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Pathophysiology of TFII-I: Old Guard Wearing New Hats.Trends in molecular medicine · 2017
    Review
  12. Article
  13. Significant association between upstream transcription factor 1 rs2516839 polymorphism and hepatocellular carcinoma risk: a case-control study.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2015
    Article
  14. Article
  15. Article
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  17. The shape of the human language-ready brain.Frontiers in psychology · 2014
    Article
  18. Article
  19. Evolution of general transcription factors.Journal of molecular evolution · 2013
    Article
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

A L RoyLaboratory of Biochemistry and Molecular Biology, The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.
H Du
P D Gregor
C D Novina
E Martinez
R G Roeder
Rockefeller University · US

Funding

REGULATION OF VIRAL GENE TRANSCRIPTIONF32AI007696 · NIAID · ROCKEFELLER UNIVERSITY · PI GREGOR, POLLY D. · 1987 to 1987
–
MOLECULAR BASIS OF CELL GROWTH AND TRANSFORMATIONR35CA042567 · NCI · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 1986 to 1999
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NCI NIH HHS CA09673NCI NIH HHS CA42567NIAID NIH HHS F32 AI07696
6 · The paper itself

Abstract

The transcription factor TFII-I has been shown to bind independently to two distinct promoter elements, a pyrimidine-rich initiator (Inr) and a recognition site (E-box) for upstream stimulatory factor 1 (USF1), and to stimulate USF1 binding to both of these sites. Here we describe the isolation of a cDNA encoding TFII-I and demonstrate that the corresponding 120 kDa polypeptide, when expressed ectopically, is capable of binding to both Inr and E-box elements. The primary structure of TFII-I reveals novel features that include six directly repeated 90 residue motifs that each possess a potential helix-loop/span-helix homology. These unique structural features suggest that TFII-I may have the capacity for multiple protein-protein and, potentially, multiple protein-DNA interactions. Consistent with this hypothesis and with previous in vitro studies, we further demonstrate that ectopic TFII-I and USF1 can act synergistically, and in some cases independently, to activate transcription in vivo through both Inr and the E-box elements of the adenovirus major late promoter. We also describe domains of USF1 that are necessary for its independent and synergistic activation functions.

Indexed as

Promoter Regions, GeneticAdenoviridaeAmino Acid SequenceBinding SitesCloning, MolecularDNA-Binding ProteinsDNA, ComplementaryGene Expression RegulationGenes, ReporterHeLa CellsHumansMolecular Sequence DataProtein BindingRecombinant ProteinsRepetitive Sequences, Nucleic AcidTranscription FactorsDNA-Binding ProteinsDNA, ComplementaryRecombinant ProteinsTranscription FactorsUpstream Stimulatory FactorsUSF1 protein, human

Identifiers

PMID9384587
PMCPMC1170311
OpenAlexW1967703786

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.