Evidence map›Paper›PMID 9358745›Full record

ArticleThe American journal of pathology1997

Internucleosomal DNA cleavage triggered by plasma membrane damage during necrotic cell death. Involvement of serine but not cysteine proteases.

Z Dong, P Saikumar, J M Weinberg, M A Venkatachalam

Abstract read
In one paragraph

Article in The American journal of pathology, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 1 synthesis or guideline pooled it, 234 citations in OpenAlex.

  1. Programmed cell death detection methods: a systematic review and a categorical comparison.Apoptosis : an international journal on programmed cell death · 2022
    Pooled it
  2. Genomic and proteomic conversion of brain ischemia to Alzheimer's disease.Frontiers in cell and developmental biology · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. The role of glycine in regulated cell death.Cellular and molecular life sciences : CMLS · 2016
    Review
  11. Review
  12. Article
  13. Article
  14. Targeting apoptosis in autoimmune hepatitis.Digestive diseases and sciences · 2014
    Review
  15. Article
  16. Article
  17. Cell-programmed death induced by walnut husk washing waters in three horticultural crops.Environmental science and pollution research international · 2014
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Z DongDepartment of Pathology, University of Texas Health Science Center at San Antonto 78284-7750, USA.
P Saikumar
J M Weinberg
M A Venkatachalam
The University of Texas Health Science Center at San Antonio · US

Funding

CELLULAR PATHOPHYSIOLOGY OF ACUTE RENAL FAILURER01DK034275 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WEINBERG, JOEL M. · 1986 to 2012
$3.4M
PTEN REGULATION DURING ISCHEMIC ACUTE RENAL FAILURER01DK037139 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI VENKATACHALAM, MANJERI A · 1987 to 2008
$2.3M
MEMBRANE PATHOLOGY IN RENAL CELL INJURYR37DK037139 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI VENKATACHALAM, MANJERI A · 1996 to 2003
$1.8M
Cellular Pathophysiology of Acute Renal FailureR56DK034275 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WEINBERG, JOEL M. · 2007 to 2007
$428k
MECHANISMS OF PROTECTION BY GLYCINE AGAINST CELL DEATHR01DK048417 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI VENKATACHALAM, MANJERI A · 1994 to 1998
–
NIDDK NIH HHS DK34275NIDDK NIH HHS DK37139NIDDK NIH HHS DK48417
6 · The paper itself

Abstract

Autolytic DNA breakdown, detected as smears in electrophoretic gels, is a late event in necrosis. On the other hand, internucleosomal DNA cleavage, visualized as ladders, is thought to be a hallmark of apoptosis. We now report that this specific form of DNA fragmentation also occurs during necrosis and is an early event but appears to be triggered by proteolytic mechanisms significantly different from those documented in apoptosis. Treatment of MDCK cells with a mitochondrial uncoupler and a Ca2+ ionophore led to ATP depletion, necrotic morphology, and progressive fragmentation of DNA in an internucleosomal or ladder pattern. DNA breakdown was immediately preceded by increased permeability of the plasma membrane to macromolecules. Provision of glycine along with the noxious agents did not modify the extent of ATP depletion, but prevented plasma membrane damage. This was accompanied by complete inhibition of DNA fragmentation. Internucleosomal DNA cleavage was observed also during necrosis after rapid permeabilization of plasma membranes by detergents or streptolysin-O in hepatocytes, thymocytes, and P19, Jurkat, and MDCK cells. DNA fragmentation associated with necrosis was Ca2+/Mg2+ dependent, was suppressed by endonuclease inhibitors, and was abolished by serine protease inhibitors but not by inhibitors of interleukin-1 beta converting enzyme (ICE)-related proteases or caspases. Moreover, unlike apoptosis, it was not accompanied by caspase-mediated proteolysis. On the other hand, the cleavage-site-directed chymotryptic inhibitor N-tosyl-L-phenylalanyl-chloromethyl ketone (TPCK) suppressed DNA fragmentation not only in necrotic cells but also during Fas-mediated apoptosis, without inhibiting caspase-related proteolysis. The results suggest a novel pathway of endonuclease activation during necrosis not involving the participation of caspases. In addition, they indicate that techniques based on double-strand DNA breaks may not reliably differentiate between apoptosis and necrosis.

Indexed as

NecrosisAdenosine TriphosphateAnimalsCalciumCell LineCell MembraneCell Membrane PermeabilityCysteine EndopeptidasesDNADogsEndonucleasesEnzyme InhibitorsMagnesiumNucleosomesSerine EndopeptidasesAdenosine TriphosphateCalciumCysteine EndopeptidasesDNAEndonucleasesEnzyme InhibitorsMagnesiumNucleosomesSerine Endopeptidases

Identifiers

PMID9358745
PMCPMC1858099
OpenAlexW1929236031

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.