Evidence map›Paper›PMID 9356452›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1997

Novel mechanism for carbamoyl-phosphate synthetase: a nucleotide switch for functionally equivalent domains.

M Kothe, B Eroglu, H Mazza, H Samudera, S Powers-Lee

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Nucleotide recognition in the ATP-grasp protein carbamoyl phosphate synthetase.Protein science : a publication of the Protein Society · 2004
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

M KotheDepartment of Biology, Northeastern University, Boston, MA 02115, USA.
B Eroglu
H Mazza
H Samudera
S Powers-Lee
Northeastern University · US

Funding

REGULATION OF THE ACTIVITY OF THE UREA CYCLER01DK033460 · NIDDK · NORTHEASTERN UNIVERSITY · PI POWERS-LEE, SUSAN G · 1986 to 1994
–
NIDDK NIH HHS DK-33460
6 · The paper itself

Abstract

Carbamoyl-phosphate synthetases (CPSs) utilize two molecules of ATP at two internally duplicated domains, B and C. Domains B and C have recently been shown to be structurally [Thoden, J. B., Holden, H. M., Wesenberg, G., Raushel, F. M. & Rayment, I. (1997) Biochemistry 36, 6305-6316] and functionally [Guy, H. I. & Evans, D. R. (1996) J. Biol. Chem. 271, 13762-13769] equivalent. We have carried out a site-directed mutagenic analysis that is consistent with ATP binding to a palmate motif rather than to a Walker A/B motif in domains B and C. To accommodate our present findings, as well as the other recent findings of structural and functional equivalence, we are proposing a novel mechanism for CPS. In this mechanism utilization of ATP bound to domain C is coupled to carbamoyl-phosphate synthesis at domain B via a nucleotide switch, with the energy of ATP hydrolysis at domain C allowing domain B to cycle between two alternative conformations.

Indexed as

Amino Acid SequenceCarbamoyl-Phosphate Synthase (Ammonia)Carbamoyl-Phosphate Synthase (Glutamine-Hydrolyzing)Enzyme ActivationEscherichia coliMolecular Sequence DataMutagenesis, Site-DirectedProtein ConformationSequence AlignmentStructure-Activity RelationshipCarbamoyl-Phosphate Synthase (Ammonia)Carbamoyl-Phosphate Synthase (Glutamine-Hydrolyzing)

Identifiers

PMID9356452
PMCPMC24940
OpenAlexW2044120163

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.