Evidence map›Paper›PMID 9348532›Full record

ArticleMolecular biology of the cell1997

Interaction of coatomer with aminoglycoside antibiotics: evidence that coatomer has at least two dilysine binding sites.

R T Hudson, R K Draper

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 32 citations in OpenAlex.

  1. In Vitro Reconstitution of Plant COPII Vesicles.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. COPI-mediated transport.The Journal of membrane biology · 2006
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Receptor-induced polymerization of coatomer.Proceedings of the National Academy of Sciences of the United States of America · 1999
    Article
  15. A single binding site for dilysine retrieval motifs and p23 within the gamma subunit of coatomer.Proceedings of the National Academy of Sciences of the United States of America · 1998
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

R T HudsonMolecular and Cell Biology Program, University of Texas at Dallas, Richardson 75083-0688, USA.
R K Draper
The University of Texas at Dallas · US

Funding

MUTANTS WITH DEFECTS IN ENDOCYTIC FUNCTIONR01GM034297 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI DRAPER, ROCKFORD KEITH · 1985 to 1999
–
NIGMS NIH HHS GM-34297
6 · The paper itself

Abstract

Coatomer is the soluble precursor of the COPI coat (coat protein I) involved in traffic among membranes of the endoplasmic reticulum and the Golgi apparatus. We report herein that neomycin precipitates coatomer from cell extracts and from purified coatomer preparations. Precipitation first increased and then decreased as the neomycin concentration increased, analogous to the precipitation of a polyvalent antigen by divalent antibodies. This suggested that neomycin cross-linked coatomer into large aggregates and implies that coatomer has two or more binding sites for neomycin. A variety of other aminoglycoside antibiotics precipitated coatomer, or if they did not precipitate, they interfered with the ability of neomycin to precipitate. Coatomer is know to interact with a motif (KKXX) containing adjacent lysine residues at the carboxyl terminus of the cytoplasmic domains of some membrane proteins resident in the endoplasmic reticulum. All of the antibiotics that interacted with coatomer contain at least two close amino groups, suggesting that the antibiotics might be interacting with the di-lysine binding site of coatomer. Consistent with this idea, di-lysine itself blocked the interaction of antibiotics with coatomer. Moreover, di-lysine and antibiotics each blocked the coating of Golgi membranes by coatomer. These data suggest that certain aminoglycoside antibiotics interact with di-lysine binding sites on coatomer and that coatomer contains at least two of these di-lysine binding sites.

Indexed as

AnimalsAnti-Bacterial AgentsBinding SitesChemical PrecipitationCHO CellsCoatomer ProteinCricetinaeDipeptidesDrug InteractionsGolgi ApparatusIntracellular MembranesLysineMembrane ProteinsNeomycinAnti-Bacterial AgentsCoatomer ProteinDipeptidesLysineMembrane ProteinsNeomycin

Identifiers

PMID9348532
PMCPMC25637
OpenAlexW2151218344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.