Evidence map›Paper›PMID 9338963›Full record

ArticleThe Plant cell1997

PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene.

S Kosugi, Y Ohashi

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 201 papers.

0numbers the graph read from it
0cells of the map it votes in
201citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

201 citing papers in PubMed, 365 citations in OpenAlex.

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  9. Genome-wide identification and expression analysis of thePhysiology and molecular biology of plants : an international journal of functional plant biology · 2025
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  11. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2025
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  13. Horticulture research · 2025
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  15. Overexpression ofPlants (Basel, Switzerland) · 2025
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  17. Genome-wide identification of oatFrontiers in genetics · 2025
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  18. Comprehensive Analysis of theInternational journal of molecular sciences · 2024
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141 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

S KosugiNational Institute of Agrobiological Resources, Ibaraki, Japan.
Y Ohashi
Institute of Agrobiological Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have previously defined the promoter elements, sites IIa and IIb, in the rice proliferating cell nuclear antigen (PCNA) gene that are essential for meristematic tissue-specific expression. In this study, we isolated and characterized cDNAs encoding proteins that specifically bind to sites IIa and IIb. The two DNA binding proteins, designated PCF1 and PCF2, share > 70% homology in common conserved sequences at the N-terminal regions. The conserved regions are responsible for DNA binding and homodimer and heterodimer formation, and they contain a putative basic helix-loop-helix (bHLH) motif. The structure and DNA binding specificity of the bHLH motif are distinguishable from those of other known bHLH proteins that bind to the E-box. The motif is > 70% homologous to several expressed sequence tags from Arabidopsis and rice, suggesting that PCF1 and PCF2 are members of a novel family of proteins that are conserved in monocotyledons and dicotyledons. A supershift assay using an anti-PCF2 antibody showed the involvement of PCF2 in site IIa (site IIb) binding activities in rice nuclear extracts, particularly in meristematic tissues. PCF1 and PCF2 were also more likely to form heterodimers than homodimers. Our results suggest that PCF1 and PCF2 are involved in meristematic tissue-specific expression of the rice PCNA gene through binding to sites IIa and IIb and formation of homodimers or heterodimers.

Indexed as

Plant ProteinsAmino Acid SequenceBase SequenceBasic Helix-Loop-Helix ProteinsCell NucleusCloning, MolecularDNA-Binding ProteinsDNA, ComplementaryMolecular Sequence DataOryzaProliferating Cell Nuclear AntigenSequence Homology, Nucleic AcidBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsDNA, ComplementaryPCF1 protein, Oryza sativaPCF2 protein, Oryza sativaPlant ProteinsProliferating Cell Nuclear Antigen

Identifiers

PMID9338963
PMCPMC157037
OpenAlexW1963536129

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.