Evidence map›Paper›PMID 9329953›Full record

ArticleThe Journal of clinical investigation1997

A p47-phox pseudogene carries the most common mutation causing p47-phox- deficient chronic granulomatous disease.

A Görlach, P L Lee, J Roesler, P J Hopkins, B Christensen, E D Green, S J Chanock, J T Curnutte

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Journal of clinical investigation, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 136 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. CRISPR-Directed Therapeutic Correction at theMolecular therapy. Methods & clinical development · 2020
    Article
  8. Article
  9. Review
  10. CRISPR/Cas9-generated p47Scientific reports · 2017
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

A GörlachThe Scripps Research Institute, Department of Molecular & Experimental Medicine, La Jolla, California 92037, USA.
P L Lee
J Roesler
P J Hopkins
B Christensen
E D Green
S J Chanock
J T Curnutte
Scripps Research Institute · USArk Therapeutic (United States) · USNational Human Genome Research Institute · USNational Institutes of Health · US

Funding

VPA 985 IN LIVER CIRRHOSIS &ASCITESM01RR000833 · NCRR · SCRIPPS RESEARCH INSTITUTE · PI BABIOR, BERNARD M · 1985 to 2004
$14.0M
REGULATION OF SUPEROXIDE PRODUCTION BY HUMAN NEUTROPHILSR01AI024838 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI FRIEDMAN, JEFFREY S · 1986 to 2007
$3.1M
NCRR NIH HHS RR00833NIAID NIH HHS R01 AI24838
6 · The paper itself

Abstract

The predominant genetic defect causing p47-phox-deficient chronic granulomatous disease (A47 degrees CGD) is a GT deletion (DeltaGT) at the beginning of exon 2. No explanation exists to account for the high incidence of this single mutation causing a rare disease in an unrelated, racially diverse population. In each of 34 consecutive unrelated normal individuals, both the normal and mutant DeltaGT sequences were present in genomic DNA, suggesting that a p47-phox related sequence carrying DeltaGT exists in the normal population. Screening of genomic bacteriophage and YAC libraries identified 13 p47-phox bacteriophage and 19 YAC clones. The GT deletion was found in 11 bacteriophage and 15 YAC clones. Only 5 exonic and 33 intronic differences distinguished all DeltaGT clones from all wild-type clones. The most striking differences were a 30-bp deletion in intron 1 and a 20-bp duplication in intron 2. These results provide good evidence for the existence of at least one highly homologous p47-phox pseudogene containing the DeltaGT mutation. The p47-phox gene and pseudogene(s) colocalize to chromosome 7q11.23. This close linkage, together with the presence within each gene of multiple recombination hot spots, suggests that the predominance of the DeltaGT mutation in A47 degrees CGD is caused by recombination events between the wild-type gene and the pseudogene(s).

Indexed as

MutationPseudogenesBacteriophagesChromosome MappingChromosomes, Artificial, YeastChromosomes, Human, Pair 7ExonsGene DosageGenetic VariationGenomic LibraryGranulomatous Disease, ChronicHumansIntronsNADPH DehydrogenaseNADPH OxidasesNeutrophilsNADPH DehydrogenaseNADPH Oxidasesneutrophil cytosolic factor 1Phosphoproteins

Identifiers

PMID9329953
PMCPMC508379
OpenAlexW2075186587

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.