Evidence map›Paper›PMID 9321657›Full record

ArticleNucleic acids research1997

A conserved core element is functionally important for maize mitochondrial promoter activity in vitro.

A G Caoile, D B Stern

Abstract read
In one paragraph

Article in Nucleic acids research, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Genomic context influences the activity of maize mitochondrial cox2 promoters.Proceedings of the National Academy of Sciences of the United States of America · 1999
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

A G CaoileBoyce Thompson Institute for Plant Research, Cornell University, Tower Road, Ithaca, NY 14853-1801, USA.
D B Stern

Funding

IN VITRO ANALYSIS OF PLANT MITOCHONDRIAL TRANSCRIPTIONR01GM052560 · NIGMS · BOYCE THOMPSON INST FOR PLANT RESEARCH · PI STERN, DAVID B · 1995 to 1997
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NIGMS NIH HHS GM52560-02
6 · The paper itself

Abstract

We have previously used a homologous in vitro transcription system to define functional elements of the maize mitochondrial atpA promoter. These elements comprise a central domain extending from -7 to +5, relative to the transcription start site, and an upstream domain of 1-3 bp that is purine rich and centered around positions -11 to -12. Within the central domain lies an essential 5 bp core element. These elements are conserved in many mitochondrial promoters, but their functionality has only been tested for atpA. In this study we have introduced mutations into the corresponding elements of two cox3 promoters and show that while the core element is essential for cox3 promoter activity, upstream element mutations have little or no effect. To define the minimal sequence required for in vitro promoter activity a series of short cloned oligonucleotides corresponding to the atpA promoter was used. While some activity was seen with a 14 bp sequence, full activity required 26 bp, suggesting that elements other than the core and upstream region can influence promoter strength. Another series of clones showed that altered spacing between the upstream and core elements of atpA had a significant effect on promoter activity. These results further define important features of the plant mitochondrial transcriptional machinery.

Indexed as

Conserved SequencePromoter Regions, GeneticBase CompositionBase SequenceCloning, MolecularDNA, MitochondrialDNA, PlantElectron Transport Complex IVMembrane ProteinsMutagenesis, Site-DirectedPlasmidsSaccharomyces cerevisiae ProteinsStructure-Activity RelationshipTranscription, GeneticZea maysCOX3 protein, S cerevisiaeDNA, MitochondrialDNA, PlantElectron Transport Complex IVMembrane ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID9321657
PMCPMC146992

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.