Evidence map›Paper›PMID 9312028›Full record

ArticleThe EMBO journal1997

A mutation mimicking ligand-induced conformational change yields a constitutive RXR that senses allosteric effects in heterodimers.

V Vivat, C Zechel, J M Wurtz, W Bourguet, H Kagechika, H Umemiya, K Shudo, D Moras, H Gronemeyer, P Chambon

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 136 citations in OpenAlex.

  1. Review
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  13. General molecular biology and architecture of nuclear receptors.Current topics in medicinal chemistry · 2012
    Review
  14. Review
  15. Article
  16. Article
  17. Modulators of the structural dynamics of the retinoid X receptor to reveal receptor function.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  18. The NR4A nuclear receptor family in eosinophils.Journal of human genetics · 2007
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

V VivatInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC)/CNRS/INSERM/ULP/Collège de France, BP 163, 67404 Illkrich Cedex, CU de Strasbourg, France.
C Zechel
J M Wurtz
W Bourguet
H Kagechika
H Umemiya
K Shudo
D Moras
H Gronemeyer
P Chambon
Institut de génétique et de biologie moléculaire et cellulaire · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutations of a single residue in the retinoid X receptor alpha (RXRalpha) ligand-binding pocket (LBP) generate constitutive, ligand-binding-competent mutants with structural and functional characteristics similar to those of agonist-bound wild-type RXR. Modelling of the mouse RXRalphaF318A LBP suggests that, like agonist binding, the mutation disrupts a cluster of van der Waals interactions that maintains helix H11 in the apo-receptor location, thereby shifting the thermodynamic equilibrium to the holo form. Heterodimerization with some apo-receptors (retinoic acid, thyroid hormone and vitamin D3 receptors) results in 'silencing' of RXRalphaF318A constitutive activity, which, on the other hand, efficiently contributes to synergistic transactivation within NGFI-B-RXR heterodimers. RAR mutants disabled for corepressor binding and/or lacking a functional AF-2 activation domain, do not relieve RXR 'silencing'. Not only RAR agonists, but also the RAR antagonist BMS614 induce conformational changes allowing RXR to exert constitutive (RXRalphaF318A) or agonist-induced (wild-type RXR) activity in heterodimers. Interestingly, the RXRalphaF318A constitutive activity generated within heterodimers in the presence of BMS614 requires the integrity of both RXR and RAR AF-2 domains. These observations suggest that, within RXR-RAR heterodimers, RAR can adopt a structure distinct from that of the active holo-RAR, thus allowing RXR to become transcriptionally responsive to agonists.

Indexed as

Protein ConformationAllosteric RegulationAmino Acid SequenceAmino Acid SubstitutionAnimalsBinding SitesDimerizationDNA-Binding ProteinsHumansLigandsMiceModels, StructuralMutagenesis, Site-DirectedNuclear Receptor Subfamily 4, Group A, Member 1Protein MultimerizationReceptors, Cytoplasmic and NuclearDNA-Binding ProteinsLigandsNR4A1 protein, humanNr4a1 protein, mouseNuclear Receptor Subfamily 4, Group A, Member 1Receptors, Cytoplasmic and NuclearReceptors, Retinoic AcidReceptors, SteroidRecombinant ProteinsRetinoidsRetinoid X ReceptorsTranscription FactorsTretinoin

Identifiers

PMID9312028
PMCPMC1170201
OpenAlexW2099624040

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.