Evidence map›Paper›PMID 9305643›Full record

ArticleThe EMBO journal1997

From genetic to structural characterization of a new class of RNA-binding domain within the SacY/BglG family of antiterminator proteins.

X Manival, Y Yang, M P Strub, M Kochoyan, M Steinmetz, S Aymerich

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 76 citations in OpenAlex.

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  12. Structure of the RBD-PRDI fragment of the antiterminator protein GlcT.Acta crystallographica. Section F, Structural biology and crystallization communications · 2012
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

X ManivalCBS, Faculté de Pharmacie, CNRS-UMR9955, INSERM-U414, Université Montpellier, France.
Y Yang
M P Strub
M Kochoyan
M Steinmetz
S Aymerich
École Polytechnique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SacY is the prototype of a family of regulatory proteins able to prevent transcription termination. It interacts with a 29 nucleotide RNA sequence able to fold into a stem-loop structure and partially overlapping with a terminator sequence located in the 5' leader mRNA region of the gene it controls. We show here that the N-terminal fragment of SacY, SacY(1-55), and the corresponding fragments of other members of the family have antiterminator activities with efficiency and specificity identical to those of the full-length proteins. In vitro, this activity correlates with the specific affinity of SacY(1-55) for its RNA target. UV melting experiments demonstrate that SacY(1-55) binding stabilizes the RNA target structure. The NMR solution structure of SacY(1-55) is very similar to that obtained in the crystal (van Tilbeurgh et al., 1997): the peptide is folded as a symmetrical dimer without any structural homology with other RNA-binding domains yet characterized. According to a preliminary NMR analysis of the SacY(1-55)-RNA complex, the protein dimer is not disrupted upon RNA binding and several residues implicated in RNA recognition are located at the edge of the dimer interface. This suggests a new mode of protein-RNA interaction.

Indexed as

Transcription FactorsAmino Acid SequenceBacillus subtilisBacterial ProteinsChromatography, GelDimerizationGenes, ReporterMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataNucleic Acid ConformationNucleic Acid DenaturationProtein ConformationProtein FoldingProtein Structure, SecondaryRecombinant Proteinsantiterminator proteins, BacteriaBacterial ProteinsRecombinant ProteinsRNA-Binding ProteinsRNA, MessengerSacY protein, Bacillus subtilisTranscription Factors

Identifiers

PMID9305643
PMCPMC1170136
OpenAlexW2162050194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.