ArticlePlant molecular biology1997
Towards map-based cloning of the barley stem rust resistance genes Rpg1 and rpg4 using rice as an intergenomic cloning vehicle.
Article in Plant molecular biology, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
56 citing papers in PubMed, 126 citations in OpenAlex.
- Application of Genomics Tools in Wheat Breeding to Attain Durable Rust Resistance.Frontiers in plant science · 2020Review
- CNMS: The preferred genic markers for comparative genomic, molecular phylogenetic, functional genetic diversity and differential gene regulatory expression analyses in chickpea.Journal of biosciences · 2015Article
- Fine mapping and chromosome walking towards the Ror1 locus in barley (Hordeum vulgare L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat.Genome biology · 2013Article
- Fine-mapping and identification of a candidate gene underlying the d2 dwarfing phenotype in pearl millet, Cenchrus americanus (L.) Morrone.G3 (Bethesda, Md.) · 2013Article
- High-resolution mapping of the Brassica napus Rfp restorer locus using Arabidopsis-derived molecular markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Fine mapping and marker development for the crossability gene SKr on chromosome 5BS of hexaploid wheat (Triticum aestivum L.).Genetics · 2009Article
- Synteny of Prunus and other model plant species.BMC genomics · 2009Article
- Genetic and physical mapping of a high recombination region on chromosome 7H(1) in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- The complex quantitative barley-Rhynchosporium secalis interaction: newly identified QTL may represent already known resistance genes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Development and mapping of simple sequence repeat markers for pearl millet from data mining of expressed sequence tags.BMC plant biology · 2008Article
- The stem rust resistance gene Rpg5 encodes a protein with nucleotide-binding-site, leucine-rich, and protein kinase domains.Proceedings of the National Academy of Sciences of the United States of America · 2008Article
- Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Genomic targeting and mapping of tiller inhibition gene (tin3) of wheat using ESTs and synteny with rice.Functional & integrative genomics · 2008Article
- A genetic map of 1,000 SSR and DArT markers in a wide barley cross.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007Article
- Genetic mapping of two powdery mildew resistance genes in einkorn (Triticum monococcum L.) accessions.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007Article
- Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends.Molecular genetics and genomics : MGG · 2006Article
- Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.BMC genomics · 2006Article
- A microcolinearity study at the earliness per se gene Eps-A(m)1 region reveals an ancient duplication that preceded the wheat-rice divergence.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006Article
- High-resolution mapping and mutation analysis separate the rust resistance genes Sr31, Lr26 and Yr9 on the short arm of rye chromosome 1.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The barley stem rust resistance genes Rpg1 and rpg4 were mapped in barley on chromosomes 1P and 7M, respectively and the syntenous rice chromosomes identified as 6P and 3P by mapping common probes in barley and rice. Rice yeast artificial chromosome (YAC), bacterial artificial chromosome (BAC) and cosmid clones were used to isolate probes mapping to the barley Rpg1 region. The rice BAC isolated with the pM13 probe was a particularly excellent source of probes. A high-resolution map of the Rpg1 region was established with 1400 gametes yielding a map density of 3.6 markers per 0.1 cM. A detailed physical map was established for the rice BAC fragment containing the Rpg1-flanking markers pM13 and B24. This fragment covers a barley genetic distance of 0.6 cM and a rice DNA physical distance of ca. 70 kb. The distribution of barley cross-overs in relation to the rice DNA physical distances was extremely uneven. The barley genetic distance between the pM13 marker and Rpg1 was 0.1 cM per ca. 55 kb, while on the proximal side it was 0.5 cm per ca. 15 kb. Three probes from the distal end of the pM13 BAC mapped 3.0 cm proximal of Rpg1 and out of synteny with rice. These experiments confirm the validity of using large insert rice clones as probe sources to saturate small barley (and other large genome cereals) genome regions with markers. They also establish a note of caution that even in regions of high microsynteny, there may be small DNA fragments that have transposed and are no longer in syntenous positions.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.