ReviewPlant molecular biology1997
Large-scale EST sequencing in rice.
Review in Plant molecular biology, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
50 citing papers in PubMed, 205 citations in OpenAlex.
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- Characterization of leaf transcriptome, development and utilization of unigenes-derived microsatellite markers in sugarcane (Physiology and molecular biology of plants : an international journal of functional plant biology · 2018Article
- Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.BMC genomics · 2015Article
- Comparative transcripts profiling of fruit mesocarp and endocarp relevant to secondary metabolism by suppression subtractive hybridization in Azadirachta indica (neem).Molecular biology reports · 2014Article
- Genomics approaches for crop improvement against abiotic stress.TheScientificWorldJournal · 2013Review
- Expressed sequence tags in cultivated peanut (Arachis hypogaea): discovery of genes in seed development and response to Ralstonia solanacearum challenge.Journal of plant research · 2012Article
- Flavonoid biosynthesis genes putatively identified in the aromatic plant Polygonum minus via Expressed Sequences Tag (EST) analysis.International journal of molecular sciences · 2012Article
- Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls.Journal of experimental botany · 2011Article
- In silico identification of coffee genome expressed sequences potentially associated with resistance to diseases.Genetics and molecular biology · 2010Article
- Generation and analysis of expressed sequence tags from leaf and root of Withania somnifera (Ashwgandha).Molecular biology reports · 2010Article
- Generation and Analysis of Expressed Sequence Tags from Olea europaea L.Comparative and functional genomics · 2010Article
- A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.).BMC genomics · 2009Article
- Rice BRITTLE CULM 5 (BRITTLE NODE) is involved in secondary cell wall formation in the sclerenchyma tissue of nodes.Plant & cell physiology · 2009Article
- Poaceae genomes: going from unattainable to becoming a model clade for comparative plant genomics.Plant physiology · 2009Article
- Peanut gene expression profiling in developing seeds at different reproduction stages during Aspergillus parasiticus infection.BMC developmental biology · 2008Article
- A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.Plant molecular biology · 2008Article
- RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection.Molecular genetics and genomics : MGG · 2007Article
- Gene expression profiling in rice young panicle and vegetative organs and identification of panicle-specific genes through known gene functions.Molecular genetics and genomics : MGG · 2005Article
- Generation and analysis of expressed sequence tags from the salt-tolerant mangrove species Avicennia marina (Forsk) Vierh.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
- Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies.Plant molecular biology · 2005Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Large-scale cDNA analysis provides several great advantages for genome investigations in rice. Isolated and partially characterized cDNA clones have contributed not only to the construction of an RFLP linkage map and physical maps of the chromosomes but also to investigations of the mechanisms of expression of various isozymes and family genes. The ultimate aim of our large-scale cDNA analysis is to catalogue all the expressed genes of this important cereal, including tissue-specific, developmental stage-specific, and stress-specific genes. As of August 1996, the Rice Genome Research Program (RGP) has isolated and partially sequenced more than 29,000 cDNA clones from various tissues and calluses in rice (Nipponbare, a japonica variety). The sequence data were translated into amino acid sequences for the 3 possible reading frames, and the similarity of these amino acid sequences to known proteins registered in PIR were examined. About 25% of the clones had significant similarities to known proteins. Some of the hit clones showed library-specific distributions, indicating that the composition of the clones in each library reflects, to some extent, the regulation of gene expression specific to differentiation, growth condition, or environmental stress. To further characterize the cDNA clones, including unknown clones, nucleotide sequence similarities of 24,728 clones were analyzed and the clones were classified into around 10,000 independent groups, suggesting that around a half or one third of expressed genes in rice have already been captured. These results obtained from our large-scale cDNA analysis provide useful information related to gene expression and regulation in rice.
Indexed as
Identifiers
9291967W1605742759What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.