ReviewPlant molecular biology1997
Microsatellite marker development, mapping and applications in rice genetics and breeding.
Review in Plant molecular biology, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers.
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Who cites it
120 citing papers in PubMed.
- Integrative GWAS and Transcriptome Analysis Reveal Genetic Architecture and Candidate Genes for Drought Tolerance During Soybean Germination.Plants (Basel, Switzerland) · 2026Article
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- GWAS and genomic prediction for resistance to soybean mosaic virus strain SC7.BMC plant biology · 2026Article
- Genetic Basis Analysis for Candidate QTLs and Functional Genes Controlling Four-Seeded Pods at Lower-Node in Soybean (Plants (Basel, Switzerland) · 2026Article
- An integrated multiple analysis reveals the genetic information associated with root-related traits in wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- High-Accuracy Chicken Breed Identification Using Microsatellite Genotype Data and AutoGluon Framework.Biology · 2025Article
- Identification of Novel Quantitative Trait Loci and Candidate Genes Associated with Grain Yield and Related Traits Under Low-Light Stress Conditions in Rice.Biomolecules · 2025Article
- Unraveling the genetic diversity, population structure, and stability for yield-related traits of rice genotypes in mid-hills of northeastern India.Journal of applied genetics · 2025Article
- Genetic architecture of anthocyanin pigment traits and purple spot (Stemphylium vesicarium) resistance in an FThe plant genome · 2025Article
- Survey of tocopherol and the associated genetic loci in wheat grain.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Identification and evaluation of low-pH-tolerant Cheongcheong/Nagdong-double haploid rice lines via QTL analysis.BMC plant biology · 2025Article
- Genetic dissection for seedling root-related traits using multiple-methods in bread wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Dynamic QTL mapping reveals the genetic architecture of stem diameter across developmental stages in foxtail millet.Planta · 2025Article
- Identification of superior haplotypes and candidate gene for seed size-related traits in soybean (Molecular breeding : new strategies in plant improvement · 2025Article
- Genome-wide association study and transcriptome analysis reveal candidate genes related to drought stress in the germination stage of soybean.Frontiers in plant science · 2025Article
- QTL mapping and candidate gene mining of seed size and seed weight in castor plant (Ricinus communis L.).BMC plant biology · 2024Article
- Pomological and Molecular Characterization of Apple Cultivars in the German Fruit Genebank.Plants (Basel, Switzerland) · 2024Article
- Quantitative Trait Loci Mapping of Heading Date in Wheat under Phosphorus Stress Conditions.Genes · 2024Article
- Identification of QTLs and candidate genes for water-soluble protein content in soybean seeds.BMC genomics · 2024Article
60 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Microsatellites are simple, tandemly repeated di- to tetra-nucleotide sequence motifs flanked by unique sequences. They are valuable as genetic markers because they are co-dominant, detect high levels of allelic diversity, and are easily and economically assayed by the polymerase chain reaction (PCR). Results from screening a rice genomic library suggest that there are an estimated 5700-10,000 microsatellites in rice, with the relative frequency of different repeats decreasing with increasing size of the motif. A map consisting of 120 microsatellite markers demonstrates that they are well distributed throughout the 12 chromosomes of rice. Five multiple copy primer sequences have been identified that could be mapped to independent chromosomal locations. The current level of genome coverage provided by these simple sequence length polymorphisms (SSLPs) in rice is sufficient to be useful for genotype identification, gene and quantitative trail locus (QTL) analysis, screening of large insert libraries, and marker-assisted selection in breeding. Studies of allelic diversity have documented up to 25 alleles at a single locus in cultivated rice germplasm and provide evidence that amplification in wild relatives of Oryza sativa is generally reliable. The availability of increasing numbers of mapped SSLP markers can be expected to complement existing RFLP and AFLP maps, increasing the power and resolution of genome analysis in rice.
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