Evidence map›Paper›PMID 9286993›Full record

ArticleJournal of bacteriology1997

Mutational characterization of promoter regions recognized by the Salmonella dublin virulence plasmid regulatory protein SpvR.

P Grob, D Kahn, D G Guiney

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

P GrobDepartment of Medicine, School of Medicine, University of California at San Diego, La Jolla 92093-0640, USA.
D Kahn
D G Guiney
University of California San Diego · US

Funding

TL MOLECULES AND GAMMA-DELTA T CELLSP01DK035108 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VARICI, NISSI · 1986 to 2013
$19.2M
PLASMID-MEDIATED VIRULENCE IN SALMONELLAR01AI032178 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GUINEY, DONALD G. · 1993 to 2008
$3.1M
Plasmid-Mediated Virulence in SalmonellaR56AI032178 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GUINEY, DONALD G. · 2010 to 2010
$386k
NIAID NIH HHS AI-32178NIDDK NIH HHS DK-35108
6 · The paper itself

Abstract

The virulence plasmid-encoded spv regulon is essential for virulence of Salmonella dublin in mice. The spvR gene product belongs to the LysR family of transcriptional regulator proteins. SpvR induces the expression of the spvABCD operon and positively regulates its own expression. DNase I protection analysis with purified SpvR fusion proteins identified SpvR binding sites within the spvA and spvR promoters (P. Grob and D. G. Guiney, J. Bacteriol. 178:1813-1820, 1996). We have used PCR mutagenesis, combined with functional selection for reduced SpvR affinity, to define the DNA elements essential for SpvR binding. For the spvR promoter fragment, a screen for reduced expression was also applied. Sequence analysis of the resulting mutant fragments reveals that the base pair changes are clustered in distinct regions. Determination of the apparent dissociation constants of SpvR for the mutant promoters showed that the spvA LysR-type motif and the upstream palindromic sequences of both promoters play an important role in SpvR recognition.

Indexed as

DNA Mutational AnalysisAnimalsBase SequenceBinding SitesGenes, BacterialGenes, RegulatorMiceMolecular Sequence DataMutagenesisPlasmidsPromoter Regions, GeneticRecombinant Fusion ProteinsSalmonellaTranscription FactorsVirulenceRecombinant Fusion ProteinsTranscription Factors

Identifiers

PMID9286993
PMCPMC179409
OpenAlexW2113439863

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.