ArticleGenetics1997
Microsatellite polymorphism in natural populations of the wild plant Arabidopsis thaliana.
Article in Genetics, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.
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Who cites it
45 citing papers in PubMed.
- Global and Local Ancestry and its Importance: A Review.Current genomics · 2024Review
- Development of genome-specific SSR markers for the identification of introgressed segments of3 Biotech · 2022Article
- Genome-wide SSR markers in bottle gourd: development, characterization, utilization in assessment of genetic diversity of National Genebank of India and synteny with other related cucurbits.Journal of applied genetics · 2022Article
- Characterisation of full-length cDNA sequences provides insights into the Eimeria tenella transcriptome.BMC genomics · 2012Article
- Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.).BMC genomics · 2010Article
- Analysis of genetic diversity in flowering dogwood natural stands using microsatellites: the effects of dogwood anthracnose.Genetica · 2010Article
- Mining non-model genomic libraries for microsatellites: BAC versus EST libraries and the generation of allelic richness.BMC genomics · 2010Article
- The origin of populations of Arabidopsis thaliana in China, based on the chloroplast DNA sequences.BMC plant biology · 2010Article
- Sequence determinants of human microsatellite variability.BMC genomics · 2009Article
- Direct estimation of the mutation rate at dinucleotide microsatellite loci in Arabidopsis thaliana (Brassicaceae).Heredity · 2009Article
- Rapid evolution of simple sequence repeat induced by allopolyploidization.Journal of molecular evolution · 2009Article
- Bin mapping of genomic and EST-derived SSRs in melon (Cucumis melo L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Morphological and microsatellite diversity associated with ecological factors in natural populations of Medicago laciniata Mill. (Fabaceae).Journal of genetics · 2008Article
- Demographic history of european populations of Arabidopsis thaliana.PLoS genetics · 2008Article
- Article
- Antagonistic pleiotropic effects reduce the potential adaptive value of the FRIGIDA locus.Proceedings of the National Academy of Sciences of the United States of America · 2007Article
- Meiosis-driven genome variation in plants.Current genomics · 2007Article
- A genome-wide survey of R gene polymorphisms in Arabidopsis.The Plant cell · 2006Article
- The pattern of polymorphism in Arabidopsis thaliana.PLoS biology · 2005Article
- Linkage disequilibrium and association studies in higher plants: present status and future prospects.Plant molecular biology · 2005Review
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Variation in repeat number at 20 microsatellite loci of Arabidopsis thaliana was studied in a worldwide sample of 42 ecotypes to investigate the pattern and level of polymorphism in repetitive sequences in natural plant populations. There is a substantial amount of variation at microsatellite loci despite the selfing nature of this plant species. The average gene diversity was 0.794 and the average number of alleles per locus was 10.6. The distribution of alleles was centered around the mean of repeat number at most loci, but could not be regarded as normal. There was a significantly positive correlation between the number of repeats and the amount of variation. For most loci, the observed number of alleles was between the expected values of the infinite allele and stepwise mutation models. The two models were rejected by the sign test. Linkage disequilibrium was detected in 12.1% of the pairwise comparisons between loci. In phylogenetic tree, there was no association between ecotype and geographic origin. This result is consistent with the recent expansion of A. thaliana throughout the world.
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