Evidence map›Paper›PMID 9250689›Full record

ArticleThe EMBO journal1997

A LINE-like transposable element in Drosophila, the I factor, encodes a protein with properties similar to those of retroviral nucleocapsids.

A Dawson, E Hartswood, T Paterson, D J Finnegan

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 56 citations in OpenAlex.

  1. Review
  2. Transposable elements inMobile DNA · 2020
    Review
  3. Protein-nucleic acid interactions of LINE-1 ORF1p.Seminars in cell & developmental biology · 2019
    Review
  4. Article
  5. Photochemical Treatment ofMediators of inflammation · 2018
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Non-LTR retrotransposons encode noncanonical RRM domains in their first open reading frame.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  12. Article
  13. RNA from the 5' end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

A DawsonInstitute of Cell and Molecular Biology, University of Edinburgh, UK.
E Hartswood
T Paterson
D J Finnegan
University of Edinburgh · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

I factors are members of the LINE-like family of transposable elements and move by reverse transcription of an RNA intermediate. Complete I factors contain two open reading frames. The amino acid sequence encoded by the first of these, ORF1, includes the motif CX2CX4HX4C that is characteristic of the nucleocapsid domain of retroviral gag polypeptides followed by a copy of the slightly different sequences CX2CX4HX6C and CX2CX9HX6C. The function of this protein is unknown. We have expressed this protein in Escherichia coli and Spodoptera frugiperda cells and have shown that it binds both DNA and RNA but without any evidence for sequence specificity. The properties of deletion derivatives of the protein indicate that more than one region is responsible for DNA binding and that the CCHC motif is not essential for this. The ORF1 protein expressed in either E. coli or Spodoptera cells forms high molecular weight structures that require the region of the protein including the CCHC motif for their formation. This protein can also accelerate the annealing of complementary single-stranded oligonucleotides. These results suggest that this protein may associate with the RNA transposition intermediates of the I factor to form particles that enter the nucleus during transposition and that it may stimulate both the priming of reverse transcription and integration. This may be generally true for the product of the first open reading frame of LINE-like elements.

Indexed as

AnimalsCross-Linking ReagentsDNA-Binding ProteinsDNA Transposable ElementsDrosophila melanogasterElectrophoresis, Polyacrylamide GelEscherichia coliGlutaralMolecular WeightNucleocapsidOpen Reading FramesRecombinant ProteinsRNA-Binding ProteinsSequence DeletionSpodopteraCross-Linking ReagentsDNA-Binding ProteinsDNA Transposable ElementsGlutaralRecombinant ProteinsRNA-Binding Proteins

Identifiers

PMID9250689
PMCPMC1170071
OpenAlexW2127756769

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.