Evidence map›Paper›PMID 9234711›Full record

ArticleMolecular and cellular biology1997

Domains required for dimerization of yeast Rad6 ubiquitin-conjugating enzyme and Rad18 DNA binding protein.

V Bailly, S Prakash, L Prakash

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 107 citations in OpenAlex.

  1. Article
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  6. Review
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  11. Review
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  15. E3 ligase Rad18 promotes monoubiquitination rather than ubiquitin chain formation by E2 enzyme Rad6.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  16. E2 ligase dRad6 regulates DMP53 turnover in Drosophila.The Journal of biological chemistry · 2011
    Article
  17. Article
  18. Review
  19. Article
  20. Building ubiquitin chains: E2 enzymes at work.Nature reviews. Molecular cell biology · 2009
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

V BaillySealy Center for Molecular Science, University of Texas Medical Branch, Galveston 77555-1061, USA.
S Prakash
L Prakash
The University of Texas Medical Branch at Galveston · US

Funding

REPAIR OF DNA DAMAGED BY UV IRRADIATION IN YEASTR01GM019261 · NIGMS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PRAKASH, LOUISE · 1985 to 2003
$1.4M
NIGMS NIH HHS GM19261
6 · The paper itself

Abstract

The RAD6 gene of Saccharomyces cerevisiae encodes a ubiquitin-conjugating enzyme required for postreplicational repair of UV-damaged DNA and for damage-induced mutagenesis. In addition, Rad6 functions in the N end rule pathway of protein degradation. Rad6 mediates its DNA repair role via its association with Rad18, whose DNA binding activity may target the Rad6-Rad18 complex to damaged sites in DNA. In its role in N end-dependent protein degradation, Rad6 interacts with the UBR1-encoded ubiquitin protein ligase (E3) enzyme. Previous studies have indicated the involvement of N-terminal and C-terminal regions of Rad6 in interactions with Ubr1. Here, we identify the regions of Rad6 and Rad18 that are involved in the dimerization of these two proteins. We show that a region of 40 amino acids towards the C terminus of Rad18 (residues 371 to 410) is sufficient for interaction with Rad6. This region of Rad18 contains a number of nonpolar residues that have been conserved in helix-loop-helix motifs of other proteins. Our studies indicate the requirement for residues 141 to 149 at the C terminus, and suggest the involvement of residues 10 to 22 at the N terminus of Rad6, in the interaction with Rad18. Each of these regions of Rad6 is indicated to form an amphipathic helix.

Indexed as

Saccharomyces cerevisiae ProteinsAmino Acid SequenceDimerizationDNA-Binding ProteinsDNA RepairHelix-Loop-Helix MotifsLigasesMolecular Sequence DataProtein Structure, SecondaryRecombinant Fusion ProteinsSaccharomyces cerevisiaeUbiquitin-Conjugating EnzymesZinc FingersDNA-Binding ProteinsLigasesRAD18 protein, S cerevisiaeRAD6 protein, S cerevisiaeRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsUbiquitin-Conjugating Enzymes

Identifiers

PMID9234711
PMCPMC232307
OpenAlexW2100443229

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.