Evidence map›Paper›PMID 9224620›Full record

ArticleNucleic acids research1997

Identification of an intronic enhancer that nullifies upstream repression of SPARC gene expression.

K Satyamoorthy, S J Samulewicz, L D Thornburg, A Basu, C C Howe

Abstract read
In one paragraph

Article in Nucleic acids research, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

K SatyamoorthyThe Wistar Institute, 3601 Spruce Street, Philadelphia, PA 19104, USA.
S J Samulewicz
L D Thornburg
A Basu
C C Howe

Funding

GENE EXPRESSION AND MAMMALIAN DEVELOPMENTR01GM037762 · NIGMS · WISTAR INSTITUTE · PI HOWE, CHIN C · 1987 to 1994
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DNA METHYLATION AND DEVELOPMENTR01GM047421 · NIGMS · WISTAR INSTITUTE · PI HOWE, CHIN C · 1992 to 1995
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NIGMS NIH HHS GM37762NIGMS NIH HHS GM47421
6 · The paper itself

Abstract

The SPARC gene 5'flanking sequence has been shown to contain enhancer elements, but also negative control elements immediately upstream of the enhancer elements. Although these 5'enhancer elements are active in F9 and PYS-2 cells, their activities are nullified by the 5'repressor activity. In the present study we have identified within intron 1 between nucleotides (nt) +5000 and +5150 of the SPARC gene an enhancer element that bound to two transcription factors of 48 and 52 kDa and between nt +5000 and +5523 a DNase I hypersensitive site. Furthermore, a region containing the 3'intron 1 enhancer element, together with the 5'enhancer elements, neutralized the 5'repressor activity and stimulated efficient transcription. The resulting SPARC promoter activity is about equal in F9, differentiated F9 and PYS-2 cells. We consistently found that the rate of SPARC transcription is nearly the same in F9 and PYS-2 cells. Association of the 3'enhancer element in intron 1 with the DNase I hypersensitive site suggests that both play a role in regulating SPARC expression in vivo .

Indexed as

Enhancer Elements, GeneticGene Expression RegulationIntronsBase SequenceDeoxyribonuclease IDNAMolecular Sequence DataOsteonectinPromoter Regions, GeneticProteinsSequence DeletionTumor Cells, CulturedDeoxyribonuclease IDNAOsteonectinProteins

Identifiers

PMID9224620
PMCPMC146837

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.