Evidence map›Paper›PMID 9207113›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1997

Synpolydactyly phenotypes correlate with size of expansions in HOXD13 polyalanine tract.

F R Goodman, S Mundlos, Y Muragaki, D Donnai, M L Giovannucci-Uzielli, E Lapi, F Majewski, J McGaughran, C McKeown, W Reardon and 4 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 213 citations in OpenAlex.

  1. Review
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  18. Structural and functional insights into the heme-binding domain of the human soluble guanylate cyclase α2 subunit and heterodimeric α2β1.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 2 countries.

F R GoodmanMolecular Medicine Unit, Institute of Child Health, 30 Guilford Street, London WC1N 1EH, United Kingdom.
S Mundlos
Y Muragaki
D Donnai
M L Giovannucci-Uzielli
E Lapi
F Majewski
J McGaughran
C McKeown
W Reardon
J Upton
R M Winter
B R Olsen
P J Scambler
Birmingham Women's Hospital · GBUniversity of Florence · IT

Funding

STRUCTURE OF TYPE I AND TYPE II PROCOLLAGENSR01AR036819 · NIAMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI OLSEN, BJORN REINO · 1986 to 2016
$8.7M
COLLAGEN GENE STRUCTURE AND EXPRESSIONR01AR036820 · NIAMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI OLSEN, BJORN REINO · 1986 to 2013
$6.7M
BIOGENESIS OF EXTRACELLULAR MATRIXR37AR036819 · NIAMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI OLSEN, BJORN R · 1992 to 2001
$827k
Biogenesis of Extracellular MatrixR56AR036819 · NIAMS · HARVARD MEDICAL SCHOOL · PI OLSEN, BJORN REINO · 2018 to 2019
$746k
COLLAGEN GENE STRUCTURE AND EXPRESSIONR37AR036820 · NIAMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI OLSEN, BJORN R · 1993 to 1995
–
NIAMS NIH HHS AR36819NIAMS NIH HHS AR36820NIAMS NIH HHS R01 AR036819NIAMS NIH HHS R01 AR036820NIAMS NIH HHS R37 AR036819NIAMS NIH HHS R56 AR036819
6 · The paper itself

Abstract

Synpolydactyly (SPD) is a dominantly inherited congenital limb malformation. Typical cases have 3/4 finger and 4/5 toe syndactyly, with a duplicated digit in the syndactylous web, but incomplete penetrance and variable expressivity are common. The condition has recently been shown to be caused by expansions of an imperfect trinucleotide repeat sequence encoding a 15-residue polyalanine tract in HOXD13. We have studied 16 new and 4 previously published SPD families, with between 7 and 14 extra residues in the tract, to analyze the molecular basis for the observed variation in phenotype. Although there is no evidence of change in expansion size within families, even over six generations, there is a highly significant increase in the penetrance and severity of phenotype with increasing expansion size, affecting both hands (P = 0.012) and feet (P < 0. 00005). Affected individuals from a family with a 14-alanine expansion, the largest so far reported, all have a strikingly similar and unusually severe limb phenotype, involving the first digits and distal carpals. Affected males from this family also have hypospadias, not previously described in SPD, but consistent with HOXD13 expression in the developing genital tubercle. The remarkable correlation between phenotype and expansion size suggests that expansion of the tract leads to a specific gain of function in the mutant HOXD13 protein, and has interesting implications for the role of polyalanine tracts in the control of transcription.

Indexed as

Transcription FactorsTrinucleotide RepeatsBase SequenceFemaleHomeodomain ProteinsHumansMaleMolecular Sequence DataPedigreePeptidesSyndactylyHomeodomain ProteinsHOXD13 protein, humanPeptidespolyalanineTranscription Factors

Identifiers

PMID9207113
PMCPMC23843
OpenAlexW2102264829

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.