Evidence map›Paper›PMID 9177192›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1997

Ionic effects on the elasticity of single DNA molecules.

C G Baumann, S B Smith, V A Bloomfield, C Bustamante

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 330 papers.

0numbers the graph read from it
0cells of the map it votes in
330citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

330 citing papers in PubMed, 1,004 citations in OpenAlex.

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  10. DNA synthesis inside the hepatitis B virus creates a high-energy spool.bioRxiv : the preprint server for biology · 2026
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270 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

C G BaumannDepartment of Biochemistry, University of Minnesota, St. Paul, MN 55108, USA.
S B Smith
V A Bloomfield
C Bustamante
University of Minnesota · USUniversity of Oregon · US

Funding

THE PHYSICAL CHEMISTRY OF NUCLEIC ACIDSR01GM032543 · NIGMS · UNIVERSITY OF OREGON · PI CARLOS Jose BUSTAMANTE · 1985 to 2026
$6.4M
PHYSICAL CHEMISTRY OF NUCLEIC ACIDSR37GM032543 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BUSTAMANTE, CARLOS JOSE · 1999 to 2008
$2.4M
POLYAMINE-POLYNUCLEOTIDE INTERACTIONSR01GM028093 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI BLOOMFIELD, VICTOR A · 1985 to 2002
$900k
MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008277 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI THOMAS, DAVID DALE · 1988 to 2002
$696k
NIGMS NIH HHS GM 08277NIGMS NIH HHS GM 28093NIGMS NIH HHS GM 32543NIGMS NIH HHS R01 GM028093NIGMS NIH HHS R01 GM032543NIGMS NIH HHS R37 GM032543NIGMS NIH HHS T32 GM008277
6 · The paper itself

Abstract

We used a force-measuring laser tweezers apparatus to determine the elastic properties of lambda-bacteriophage DNA as a function of ionic strength and in the presence of multivalent cations. The electrostatic contribution to the persistence length P varied as the inverse of the ionic strength in monovalent salt, as predicted by the standard worm-like polyelectrolyte model. However, ionic strength is not always the dominant variable in determining the elastic properties of DNA. Monovalent and multivalent ions have quite different effects even when present at the same ionic strength. Multivalent ions lead to P values as low as 250-300 A, well below the high-salt "fully neutralized" value of 450-500 A characteristic of DNA in monovalent salt. The ions Mg2+ and Co(NH3)63+, in which the charge is centrally concentrated, yield lower P values than the polyamines putrescine2+ and spermidine3+, in which the charge is linearly distributed. The elastic stretch modulus, S, and P display opposite trends with ionic strength, in contradiction to predictions of macroscopic elasticity theory. DNA is well described as a worm-like chain at concentrations of trivalent cations capable of inducing condensation, if condensation is prevented by keeping the molecule stretched. A retractile force appears in the presence of multivalent cations at molecular extensions that allow intramolecular contacts, suggesting condensation in stretched DNA occurs by a "thermal ratchet" mechanism.

Indexed as

CobaltDNAElasticityEntropyIonsMagnesiumModels, ChemicalOsmolar ConcentrationPutrescineQuaternary Ammonium CompoundsSpermidineStatic ElectricityThermodynamicsCobaltDNAIonsMagnesiumPutrescineQuaternary Ammonium CompoundsSpermidine

Identifiers

PMID9177192
PMCPMC21024
OpenAlexW2028120697

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.