Evidence map›Paper›PMID 9171078›Full record

ArticleNucleic acids research1997

Activation of enhancer elements by the homeobox gene Cdx2 is cell line specific.

J K Taylor, T Levy, E R Suh, P G Traber

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
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  5. Article
  6. Gastrointestinal differentiation marker Cytokeratin 20 is regulated by homeobox gene CDX1.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  7. Article
  8. Cdx4 dysregulates Hox gene expression and generates acute myeloid leukemia alone and in cooperation with Meis1a in a murine model.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

J K TaylorDepartment of Medicine, University of Pennsylvania, 415 Curie Boulevard, Philadelphia, PA 19104, USA.
T Levy
E R Suh
P G Traber
University of Pennsylvania · US

Funding

REGULATION OF INTESTINE-SPECIFIC GENE TRANSCRIPTIONR01DK046704 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI SUH, EUNRAN · 1992 to 2006
$1.6M
NIDDK NIH HHS R01 DK46704
6 · The paper itself

Abstract

Cdx2 is a caudal-related homeodomain transcription factor that is expressed in complex patterns during mouse development and at high levels in the intestinal epithelium of adult mice. Cdx2 activates transcription of intestinal gene promoters containing specific binding sites. Moreover, Cdx2 has been shown to induce intestinal differentiation in cell lines. In this study, we show that Cdx2 is able to bind to two well defined enhancer elements in the HoxC8 gene. We then demonstrate that Cdx2 is able to activate transcription of heterologous promoters when its DNA binding element is placed in an enhancer context. Furthermore, the ability to activate enhancer elements is cell-line dependent. When the Cdx2 activation domain was linked to the Gal4 DNA binding domain, the chimeric protein was able to activate Gal4 enhancer constructs in an intestinal cell line, but was unable to activate transcription in NIH3T3 cells. These data suggest that there are cell-specific factors that allow the Cdx2 activation domain to function in the activation of enhancer elements. We hypothesize that either a co-activator protein or differential phosphorylation of the activation domain may be the mechanism for intestinal cell line-specific function of Cdx2 and possibly in other tissues in early development.

Indexed as

Enhancer Elements, GeneticSaccharomyces cerevisiae ProteinsTranscription Factors3T3 CellsAnimalsBinding SitesCDX2 Transcription FactorCell DifferentiationColonic NeoplasmsDNA-Binding ProteinsDNA PrimersFungal ProteinsGenes, ReporterHomeodomain ProteinsHumansLuciferasesCDX2 Transcription FactorDNA-Binding ProteinsDNA PrimersFungal ProteinsGAL4 protein, S cerevisiaeHomeodomain ProteinsLuciferasesRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription Factors

Identifiers

PMID9171078
PMCPMC146749
OpenAlexW2124620770

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.