Evidence map›Paper›PMID 9141356›Full record

ArticleThe Journal of membrane biology1997

Transmembrane insertion of the colicin Ia hydrophobic hairpin.

P K Kienker, X Qiu, S L Slatin, A Finkelstein, K S Jakes

Abstract read
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In one paragraph

Article in The Journal of membrane biology, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 93 citations in OpenAlex.

  1. Bacterial pore-forming toxins.Microbiology (Reading, England) · 2022
    Article
  2. Article
  3. A membrane-depolarizing toxin substrate of theProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Review
  5. Crystal structure of theThe Journal of biological chemistry · 2018
    Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Development of a novel small antibody that retains specificity for tumor targeting.Journal of experimental & clinical cancer research : CR · 2009
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Colicin biology.Microbiology and molecular biology reviews : MMBR · 2007
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

P K KienkerDepartment of Physiology & Biophysics, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA.
X Qiu
S L Slatin
A Finkelstein
K S Jakes
Albert Einstein College of Medicine · US

Funding

INTERACTION OF MODEL SYNAPTIC VESICLES WITH LIPID BILAYR01GM029210 · NIGMS · YESHIVA UNIVERSITY · PI FINKELSTEIN, ALAN · 1985 to 2013
$6.0M
GATING OF PROTEIN CHANNELS IN LIPID BILAYER MEMBRANESR37GM029210 · NIGMS · YESHIVA UNIVERSITY · PI FINKELSTEIN, ALAN · 1995 to 2004
$3.5M
NIGMS NIH HHS GM29210
6 · The paper itself

Abstract

Colicin Ia is a bactericidal protein that forms voltage-dependent, ion-conducting channels, both in the inner membrane of target bacteria and in planar bilayer membranes. Its amino acid sequence is rich in charged residues, except for a hydrophobic segment of 40 residues near the carboxyl terminus. In the crystal structure of colicin Ia and related colicins, this segment forms an alpha-helical hairpin. The hydrophobic segment is thought to be involved in the initial association of the colicin with the membrane and in the formation of the channel, but various orientations of the hairpin with respect to the membrane have been proposed. To address this issue, we attached biotin to a residue at the tip of the hydrophobic hairpin, and then probed its location with the biotin-binding protein streptavidin, added to one side or the other of a planar bilayer. Streptavidin added to the same side as the colicin prevented channel opening. Prior addition of streptavidin to the opposite side protected channels from this effect, and also increased the rate of channel opening; it produced these effects even before the first opening of the channels. These results suggest a model of membrane association in which the colicin first binds with the hydrophobic hairpin parallel to the membrane; next the hairpin inserts in a transmembrane orientation; and finally the channel opens. We also used streptavidin binding to obtain a stable population of colicin molecules in the membrane, suitable for the quantitative study of voltage-dependent gating. The effective gating charge thus determined is pH-independent and relatively small, compared with previous results for wild-type colicin Ia.

Indexed as

Bacterial ProteinsBiotinColicinsIon Channel GatingIon ChannelsLipid BilayersProtein BindingProtein ConformationStreptavidinBacterial ProteinsBiotinColicinsIon ChannelsLipid BilayersStreptavidin

Identifiers

PMID9141356
OpenAlexW2051146598

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.