Evidence map›Paper›PMID 9121457›Full record

ArticleMolecular and cellular biology1997

Stability of a CTG/CAG trinucleotide repeat in yeast is dependent on its orientation in the genome.

C H Freudenreich, J B Stavenhagen, V A Zakian

Abstract read
In one paragraph

Article in Molecular and cellular biology, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
6.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 218 citations in OpenAlex.

  1. Article
  2. Recent Advances in DNA Nanomaterials.Nanomaterials (Basel, Switzerland) · 2023
    Review
  3. Article
  4. Methods to Study Z-DNA-Induced Genetic Instability.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Genetic Assays to Study Repeat Fragility in Saccharomyces cerevisiae.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  14. Review
  15. Review
  16. Of Men and Mice: Modeling the Fragile X Syndrome.Frontiers in molecular neuroscience · 2018
    Article
  17. Break-induced replication links microsatellite expansion to complex genome rearrangements.BioEssays : news and reviews in molecular, cellular and developmental biology · 2017
    Review
  18. Review
  19. Review
  20. Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

C H FreudenreichDepartment of Molecular Biology, Princeton University, New Jersey 08544, USA.
J B Stavenhagen
V A Zakian
Princeton University · US

Funding

STRUCTURE &BEHAVIOR OF YEAST TELOMERESR01GM043265 · NIGMS · PRINCETON UNIVERSITY · PI ZAKIAN, VIRGINIA A. · 1990 to 2015
$7.6M
DNA REPLICATION AND CHROMOSOME STRUCTURE IN YEASTR37GM026938 · NIGMS · PRINCETON UNIVERSITY · PI ZAKIAN, VIRGINIA A. · 2000 to 2009
$5.0M
DNA REPLICATION AND CHROMOSOME STRUCUTRE IN YEASTR01GM026938 · NIGMS · PRINCETON UNIVERSITY · PI ZAKIAN, VIRGINIA A. · 1986 to 2016
$4.3M
PIF1 HELICASE AND TELOMERE REPLICATION CONTROLF32AG005740 · NIA · PRINCETON UNIVERSITY · PI FREUDENREICH, CATHERINE H · 1995 to 1997
–
NIA NIH HHS AG05740-02NIA NIH HHS F32 AG005740NIGMS NIH HHS GM26938NIGMS NIH HHS GM43265
6 · The paper itself

Abstract

Trinucleotide repeat expansion is the causative mutation for a growing number of diseases including myotonic dystrophy, Huntington's disease, and fragile X syndrome. A (CTG/CAG)130 tract cloned from a myotonic dystrophy patient was inserted in both orientations into the genome of Saccharomyces cerevisiae. This insertion was made either very close to the 5' end or very close to the 3' end of a URA3 transcription unit. Regardless of its orientation, no evidence was found for triplet-mediated transcriptional repression of the nearby gene. However, the stability of the tract correlated with its orientation on the chromosome. In one orientation, the (CTG/CAG)130 tract was very unstable and prone to deletions. In the other orientation, the tract was stable, with fewer deletions and two possible cases of expansion detected. Analysis of the direction of replication through the region showed that in the unstable orientation the CTG tract was on the lagging-strand template and that in the stable orientation the CAG tract was on the lagging-strand template. The orientation dependence of CTG/CAG tract instability seen in this yeast system supports models involving hairpin-mediated polymerase slippage previously proposed for trinucleotide repeat expansion.

Indexed as

Genome, FungalTrinucleotide RepeatsBase SequenceDNA PrimersDNA, RecombinantDNA ReplicationGene ExpressionGenome, HumanHumansMinisatellite RepeatsModels, GeneticMyotonic DystrophyMyotonin-Protein KinaseNucleic Acid ConformationPlasmidsPolymerase Chain ReactionDMPK protein, humanDNA PrimersDNA, RecombinantMyotonin-Protein KinaseProtein Serine-Threonine Kinases

Identifiers

PMID9121457
PMCPMC232056
OpenAlexW2115237139

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.