Evidence map›Paper›PMID 9092674›Full record

ArticleNucleic acids research1997

BC1 RNA, the transcript from a master gene for ID element amplification, is able to prime its own reverse transcription.

M R Shen, J Brosius, P L Deininger

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Cytoplasmic synthesis of endogenousProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. RNA Editing and Retrotransposons in Neurology.Frontiers in molecular neuroscience · 2018
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Cis-acting influences on Alu RNA levels.Nucleic acids research · 2000
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

M R ShenDepartment of Biochemistry and Molecular Biology, Neuroscience Center of Excellence, Stanley S.Scott Cancer Center, Louisiana State University Medical Center, 1901 Perdido Street, New Orleans, LA 70112, USA. shen3@llnl.gov
J Brosius
P L Deininger
Ochsner Medical Center · USStanley Foundation · USUniversity of Münster · DE

Funding

Sine RetrotranspositionR01GM045668 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI DEININGER, PRESCOTT L. · 1993 to 2014
$4.2M
DEVELOPMENTAL/TISSUE-SPECIFIC EXPRESSION OF NEURAL GENESR01MH038819 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI BROSIUS, JURGEN · 1985 to 1991
–
NIGMS NIH HHS GM45668NIMH NIH HHS MH38819
6 · The paper itself

Abstract

ID elements are short interspersed elements (SINEs) found in high copy number in many rodent genomes. BC1 RNA, an ID-related transcript, is derived from the single copy BC1 RNA gene. The BC1 RNA gene has been shown to be a master gene for ID element amplification in rodent genomes. ID elements are dispersed through a process termed retroposition. The retroposition process involves a number of potential regulatory steps. These regulatory steps may include transcription in the appropriate tissue, transcript stability, priming of the RNA transcript for reverse transcription and integration. This study focuses on priming of the RNA transcript for reverse transcription. BC1 RNA gene transcripts are shown to be able to prime their own reverse transcription in an efficient intramolecular and site-specific fashion. This self-priming ability is a consequence of the secondary structure of the 3'-unique region. The observation that a gene actively amplified throughout rodent evolution makes a RNA capable of efficient self-primed reverse transcription strongly suggests that self-priming is at least one feature establishing the BC1 RNA gene as a master gene for amplification of ID elements.

Indexed as

GenomeRibonucleoproteins, Small CytoplasmicTranscription, GeneticAnimalsBase SequenceBlotting, SouthernDNA-Binding ProteinsDNA PrimersKineticsMolecular Sequence DataNucleic Acid ConformationPolymerase Chain ReactionRecombinant ProteinsRibonucleoproteinsRNA-Directed DNA PolymeraseRodentiaDNA-Binding ProteinsDNA PrimersRecombinant ProteinsRibonucleoproteinsRibonucleoproteins, Small CytoplasmicRNA-Directed DNA Polymerase

Identifiers

PMID9092674
PMCPMC146617
OpenAlexW2140874637

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.