Evidence map›Paper›PMID 9079909›Full record

ArticleJournal of bacteriology1997

Sequence analysis and characterization of a 40-kilodalton Borrelia hermsii glycerophosphodiester phosphodiesterase homolog.

E S Shang, J T Skare, H Erdjument-Bromage, D R Blanco, P Tempst, J N Miller, M A Lovett

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. UrinaryJournal of cellular immunology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

E S ShangDepartment of Microbiology and Immunology, UCLA School of Medicine, Los Angeles, California 90095, USA. eshang@microimmun.medsch.ucla.edu
J T Skare
H Erdjument-Bromage
D R Blanco
P Tempst
J N Miller
M A Lovett

Funding

PATHOGENIC MECHANISMS IN LYME BORRELIOSISR01AI029733 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LOVETT, MICHAEL A. · 1990 to 2005
$3.1M
RABBIT LYME DISEASE MODEL--PATHOGENESIS AND IMMUNITYR01AI037312 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MILLER, JAMES NATHANIEL · 1994 to 2003
$1.7M
GENETICS OF TREPONEMA PALLIDUM PATHOGENICITYR01AI021352 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LOVETT, MICHAEL A. · 1985 to 1995
–
NIAID NIH HHS AI-21352NIAID NIH HHS AI-29733NIAID NIH HHS AI-37312
6 · The paper itself

Abstract

We report the purification, molecular cloning, and characterization of a 40-kDa glycerophosphodiester phosphodiesterase homolog from Borrelia hermsii. The 40-kDa protein was solubilized from whole organisms with 0.1% Triton X-100, phase partitioned into the Triton X-114 detergent phase, and purified by fast-performance liquid chromatography (FPLC). The gene encoding the 40-kDa protein was cloned from a B. hermsii chromosomal DNA lambda EXlox expression library and identified by using affinity antibodies generated against the purified native protein. The deduced amino acid sequence included a 20-amino-acid signal peptide encoding a putative leader peptidase II cleavage site, indicating that the 40-kDa protein was a lipoprotein. Based on significant homology (31 to 52% identity) of the 40-kDa protein to glycerophosphodiester phosphodiesterases of Escherichia coli (GlpQ), Bacillus subtilis (GlpQ), and Haemophilus influenzae (Hpd; protein D), we have designated this B. hermsii 40-kDa lipoprotein a glycerophosphodiester phosphodiesterase (Gpd) homolog, the first B. hermsii lipoprotein to have a putative functional assignment. A nonlipidated form of the Gpd homolog was overproduced as a fusion protein in E. coli BL21(DE3)(pLysE) and was used to immunize rabbits to generate specific antiserum. Immunoblot analysis with anti-Gpd serum recognized recombinant H. influenzae protein D, and conversely, antiserum to H. influenzae protein D recognized recombinant B. hermsii Gpd (rGpd), indicating antigenic conservation between these proteins. Antiserum to rGpd also identified native Gpd as a constituent of purified outer membrane vesicles prepared from B. hermsii. Screening of other pathogenic spirochetes with anti-rGpd serum revealed the presence of antigenically related proteins in Borrelia burgdorferi, Treponema pallidum, and Leptospira kirschneri. Further sequence analysis both upstream and downstream of the Gpd homolog showed additional homologs of glycerol metabolism, including a glycerol-3-phosphate transporter (GlpT), a glycerol-3-phosphate dehydrogenase (GlpD), and a thioredoxin reductase (TrxB).

Indexed as

Amino Acid SequenceAntigens, BacterialBacterial Outer Membrane ProteinsBase SequenceBorreliaCell CompartmentationCloning, MolecularCross ReactionsDNA, BacterialElectrophoresis, Gel, Two-DimensionalEscherichia coliGenes, BacterialHaemophilus influenzaeMolecular Sequence DataPhosphoric Diester HydrolasesSequence AlignmentAntigens, BacterialBacterial Outer Membrane ProteinsDNA, Bacterialglycerophosphodiester phosphodiesterasePhosphoric Diester Hydrolases

Identifiers

PMID9079909
PMCPMC178960
OpenAlexW2121366456

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.