Evidence map›Paper›PMID 9016677›Full record

ArticleNucleic acids research1996

An enhancer LEF-1/TCF-1 site is essential for insertion site-independent transgene expression in thymus.

T L Haynes, M B Thomas, M R Dusing, M T Valerius, S S Potter, D A Wiginton

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

T L HaynesDepartment of Pediatrics, University of Cincinnati, OH 45229, USA.
M B Thomas
M R Dusing
M T Valerius
S S Potter
D A Wiginton
Cincinnati Children's Hospital Medical Center · USUniversity of Cincinnati · US

Funding

ADENOSINE DEAMINASE--MECHANISMS OF TISSUE EXPRESSIONR01GM042969 · NIGMS · CHILDREN'S HOSPITAL MED CTR (CINCINNATI) · PI WIGINTON, DAN A. · 1990 to 1994
–
NIGMS NIH HHS GM 42969
6 · The paper itself

Abstract

Transcriptional activation of eukaryotic genes involves assembly of specific multiprotein complexes on the promoters and enhancers of the genes. Recently, it has been proposed that the role of some of the proteins in the complex may be architectural, involving DNA bending, orchestration of protein-protein interaction and modulation of nucleosome structure. This role has been proposed for the HMG proteins LEF-1 and TCF-1. We examined the role of a LEF-1/TCF-1 binding site in the human adenosine deaminase (ADA) thymic enhancer. Mutational analysis demonstrated that a functional LEF-1/TCF-1 binding site is not required for enhancer-mediated transcriptional activation in transient transfection studies, but is essential for enhancer function in the in vivo chromatin context of transgenic mice. Mutation of the LEF-1/TCF-1 site destroyed the ability of the ADA enhancer/locus control region to specify high level, insertion site-independent transgene expression in thymus. DNase I and DpnII accessibility experiments indicated dramatic changes in the chromatin organization of the ADA enhancer in transgenic mice with a mutated LEF-1/TCF-1 site. This supports the hypothesis that factors binding the LEF-1/TCF-1 site play an architectural role during the in vivo activation of the ADA enhancer, possibly involving chromatin modification.

Indexed as

Enhancer Elements, GeneticTransgenesAminohydrolasesAnimalsBinding SitesCell LineChloramphenicol O-AcetyltransferaseDeoxyribonucleases, Type II Site-SpecificDNA-Binding ProteinsHepatocyte Nuclear Factor 1-alphaHumansLymphoid Enhancer-Binding Factor 1MiceMice, TransgenicMutagenesis, Site-DirectedRNA, Messengeradenine deaminaseAminohydrolasesChloramphenicol O-AcetyltransferaseDeoxyribonucleases, Type II Site-SpecificDNA-Binding ProteinsGATC-specific type II deoxyribonucleasesHepatocyte Nuclear Factor 1-alphaHnf1a protein, mouseLEF1 protein, humanLef1 protein, mouseLymphoid Enhancer-Binding Factor 1RNA, MessengerT Cell Transcription Factor 1TCF7 protein, humanTranscription Factors

Identifiers

PMID9016677
PMCPMC146351
OpenAlexW2159369729

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.