Evidence map›Paper›PMID 9008277›Full record

ArticleClinical and diagnostic laboratory immunology1997

Mycobacterium tuberculosis efpA encodes an efflux protein of the QacA transporter family.

J L Doran, Y Pang, K E Mdluli, A J Moran, T C Victor, R W Stokes, E Mahenthiralingam, B N Kreiswirth, J L Butt, G S Baron and 5 more

Open access · greenAbstract read
In one paragraph

Article in Clinical and diagnostic laboratory immunology, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Article
  3. Structure and function ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. EfpA is required for regrowth ofAntimicrobial agents and chemotherapy · 2024
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Insights onFrontiers in microbiology · 2018
    Article
  15. Review
  16. Article
  17. Energy metabolism and drug efflux in Mycobacterium tuberculosis.Antimicrobial agents and chemotherapy · 2014
    Review
  18. Article
  19. Article
  20. A balancing act: efflux/influx in mycobacterial drug resistance.Antimicrobial agents and chemotherapy · 2009
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

J L DoranDepartment of Biochemistry and Microbiology, University of Victoria, British Columbia, Canada. jdoran@uvic.ca
Y Pang
K E Mdluli
A J Moran
T C Victor
R W Stokes
E Mahenthiralingam
B N Kreiswirth
J L Butt
G S Baron
J D Treit
V J Kerr
P D Van Helden
M C Roberts
F E Nano
University of Victoria · CA

Funding

TETRACYCLINE RESISTANCE TETM IN UROGENITAL BACTERIAR01AI024136 · NIAID · UNIVERSITY OF WASHINGTON · PI ROBERTS, MARILYN C. · 1987 to 1994
–
NIAID NIH HHS AI24136
6 · The paper itself

Abstract

The Mycobacterium tuberculosis H37Rv efpA gene encodes a putative efflux protein, EfpA, of 55,670 Da. The deduced EfpA protein was similar in secondary structure to Pur8, MmrA, TcmA, LfrA, EmrB, and other members of the QacA transporter family (QacA TF) which mediate antibiotic and chemical resistance in bacteria and yeast. The predicted EfpA sequence possessed all transporter motifs characteristic of the QacA TF, including those associated with proton-antiport function and the motif considered to be specific to exporters. The 1,590-bp efpA open reading frame was G+C rich (65%), whereas the 40-bp region immediately upstream had an A+T bias (35% G+C). Reverse transcriptase-PCR assays indicated that efpA was expressed in vitro and in situ. Putative promoter sequences were partially overlapped by the A+T-rich region and by a region capable of forming alternative secondary structures indicative of transcriptional regulation in analogous systems. PCR single-stranded conformational polymorphism analysis demonstrated that these upstream flanking sequences and the 231-bp, 5' coding region are highly conserved among both drug-sensitive and multiply-drug-resistant isolates of M. tuberculosis. The efpA gene was present in the slow-growing human pathogens M. tuberculosis, Mycobacterium leprae, and Mycobacterium bovis and in the opportunistic human pathogens Mycobacterium avium and Mycobacterium intracellular. However, efpA was not present in 17 other opportunistically pathogenic or nonpathogenic mycobacterial species.

Indexed as

Membrane Transport ProteinsAmino Acid SequenceBacterial ProteinsBase SequenceBiological TransportCarrier ProteinsCloning, MolecularHumansMolecular Sequence DataMycobacterium bovisMycobacterium lepraeMycobacterium tuberculosisPolymerase Chain ReactionBacterial ProteinsCarrier ProteinsMembrane Transport ProteinsqacA protein, Staphylococcus aureus

Identifiers

PMID9008277
PMCPMC170471
OpenAlexW2109700082

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.