Evidence map›Paper›PMID 8981946›Full record

ArticleAmerican journal of human genetics1997

Duplication of seven exons in the lysyl hydroxylase gene is associated with longer forms of a repetitive sequence within the gene and is a common cause for the type VI variant of Ehlers-Danlos syndrome.

J Heikkinen, T Toppinen, H Yeowell, T Krieg, B Steinmann, K I Kivirikko, R Myllylä

Abstract read
In one paragraph

Article in American journal of human genetics, 1997. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 53 citations in OpenAlex.

  1. Aberrant expression ofInternational journal of ophthalmology · 2023
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Cloning and characterization of a third human lysyl hydroxylase isoform.Proceedings of the National Academy of Sciences of the United States of America · 1998
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

J HeikkinenBiocenter and Department of Biochemistry, University of Oulu, Finland.
T Toppinen
H Yeowell
T Krieg
B Steinmann
K I Kivirikko
R Myllylä
University of Oulu · FI

Funding

CHARACTERIZATION OF LYSYL HYDROXYLASE ISOFORMS IN SKINR01AG010215 · NIA · DUKE UNIVERSITY · PI YEOWELL, HEATHER NINA · 2000 to 2008
$2.3M
LYSYL HYDROXYLASE: STRUCTURE &REGULATORY STUDIESR29AG010215 · NIA · DUKE UNIVERSITY · PI YEOWELL, HEATHER NINA · 1992 to 1996
–
NIA NIH HHS AG10215
6 · The paper itself

Abstract

The type VI variant of the Ehlers-Danlos syndrome (EDS) is a recessively inherited connective tissue disorder which, in most families, is due to a deficiency in lysyl hydroxylase activity. We have recently characterized a homozygous duplication of 8.9 kb in the lysyl hydroxylase gene (PLOD) in two EDS VI families. The duplication is caused by a homologous recombination of Alu sequences in introns 9 and 16. Using PCR, we have analyzed 26 additional EDS VI families from various countries and found that 7 of them have this duplication. Our data has shown a frequency of 19.1% for this mutant allele among 35 EDS VI families studied by us so far. Our haplotype analysis shows a variation in the sequence of DNA region surrounding the duplication. There is an association between a particular allele size class, the long form, at the dinucleotide repeat within intron 16 and the duplication mutation in PLOD. Screening of a general population revealed one positive finding among 582 alleles tested. An abnormal sequence in exon 17 of the gene, which generated a stop codon in the exon sequence and aberrant mRNA processing, was responsible for the nonfunctionality of the other allele in one of the compound heterozygous patients.

Indexed as

Dinucleotide RepeatsExonsMultigene FamilyAllelesAmino Acid SequenceBase SequenceCells, CulturedDNAEhlers-Danlos SyndromeFemaleGene FrequencyHaplotypesHumansMaleMolecular Sequence DataPolymerase Chain ReactionDNAProcollagen-Lysine, 2-Oxoglutarate 5-Dioxygenase

Identifiers

PMID8981946
PMCPMC1712545
OpenAlexW300580931

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.