Evidence map›Paper›PMID 8914533›Full record

ArticlePlant molecular biology1996

Transcription of CABII is regulated by the biological clock in Chlamydomonas reinhardtii.

S Jacobshagen, K L Kindle, C H Johnson

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Paths toward algal genomics.Plant physiology · 2005
    Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

S JacobshagenDepartment of Biology, Vanderbilt University, Nashville, TN/USA.
K L Kindle
C H Johnson
Vanderbilt University · USCornell University · US

Funding

MOLECULAR/GENETIC ANALYSIS OF BIOLOGICAL CLOCKS IN CELLSR01MH043836 · NIMH · VANDERBILT UNIVERSITY · PI JOHNSON, CARL HIRSCHIE · 1993 to 2005
$1.3M
INPUT/OUTPUT ANALYSIS OF CELLULAR CIRCADIAN RHYTHMSR29MH043836 · NIMH · VANDERBILT UNIVERSITY · PI JOHNSON, CARL HIRSCHIE · 1988 to 1992
–
NIMH NIH HHS MH43836
6 · The paper itself

Abstract

The small gene family encoding the chlorophyll a/b-binding proteins of photosystem II (CABII or lhcb) is known to exhibit circadian rhythms of mRNA abundance in Chlamydomonas reinhardtii. In this study we investigated the role of transcription in the phenomenon. We used as reporters Chlamydomonas genes that encode nitrate reductase (NITI) and arylsulfatase (ARS2) transcriptionally fused to sequences upstream of one of the CABII genes (called CABII-1). We found that both reporters exhibited the same circadian rhythm of mRNA abundance in phase, period, and amplitude as does the endogenous CABII-1 gene. We also evaluated the efficacy of arylsulfatase enzymatic activity as a reporter and found that its half-life is too long to make it a useful reporter of rhythmic transcription during a circadian or diurnal cycle. The amount of mRNA synthesis from the CABII-1 gene was examined by in vivo labeling experiments and a circadian rhythm in transcription rate was demonstrated. In vivo labeling also revealed a circadian rhythm of mRNA synthesis for the CABII gene family as a whole. The results from the transcriptional reporter assays together with the in vivo labeling experiments strongly support the conclusion that the biological clock regulates the transcriptional activity of the CABII-I gene, and moreover that regulation at the transcriptional level is the predominant mode by which the clock regulates this gene.

Indexed as

Biological ClocksGene Expression Regulation, PlantTranscription, GeneticAnimalsArylsulfatasesChlamydomonas reinhardtiiCircadian RhythmEukaryotaGene DosageGenes, ReporterLight-Harvesting Protein ComplexesMultigene FamilyNitrate ReductaseNitrate ReductasesPhotosynthetic Reaction Center Complex ProteinsPhotosystem II Protein ComplexArylsulfatasesLight-Harvesting Protein ComplexesNitrate ReductaseNitrate ReductasesPhotosynthetic Reaction Center Complex ProteinsPhotosystem II Protein ComplexRNA, Messenger

Identifiers

PMID8914533
OpenAlexW2066453353

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.