Evidence map›Paper›PMID 8901606›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1996

Molecular markers reveal that population structure of the human pathogen Candida albicans exhibits both clonality and recombination.

Y Gräser, M Volovsek, J Arrington, G Schönian, W Presber, T G Mitchell, R Vilgalys

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed.

  1. Review
  2. Parasexuality ofFrontiers in cellular and infection microbiology · 2021
    Review
  3. OralJournal of oral microbiology · 2020
    Article
  4. Review
  5. Article
  6. Article
  7. Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  8. Article
  9. Review
  10. Article
  11. The frequency of sex in fungi.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Clonal reproduction in fungi.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. Article
  18. Evolutionary Perspectives on Human Fungal Pathogens.Cold Spring Harbor perspectives in medicine · 2014
    Review
  19. Article
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Y GräserDepartment of Microbiology and Hygiene (Charite), Humboldt University, Berlin, Germany.
M Volovsek
J Arrington
G Schönian
W Presber
T G Mitchell
R Vilgalys

Funding

MOLECULAR IDENTIFICATION OF PATHOGENIC FUNGIR01AI028836 · NIAID · DUKE UNIVERSITY · PI MITCHELL, THOMAS G. · 1991 to 2000
$304k
NIAID NIH HHS AI 28836
6 · The paper itself

Abstract

The life history of Candida albicans presents an enigma: this species is thought to be exclusively asexual, yet strains show extensive phenotypic variation. To address the population genetics of C. albicans, we developed a genetic typing method for codominant single-locus markers by screening randomly amplified DNA for single-strand conformation polymorphisms. DNA fragments amplified by arbitrary primers were initially screened for single-strand conformation polymorphisms and later sequenced using locus-specific primers. A total of 12 single base mutations and insertions were detected from six out of eight PCR fragments. Patterns of sequence-level polymorphism observed for individual strains detected considerable heterozygosity at the DNA sequence level, supporting the view that most C. albicans strains are diploid. Population genetic analyses of 52 natural isolates from Duke University Medical Center provide evidence for both clonality and recombination in C. albicans. Evidence for clonality is supported by the presence of several overrepresented genotypes, as well as by deviation of genotypic frequencies from random (Hardy-Weinberg) expectations. However, tests for nonrandom association of alleles across loci reveal less evidence for linkage disequilibrium than expected for strictly clonal populations. Although C. albicans populations are primarily clonal, evidence for recombination suggests that sexual reproduction or some other form of genetic exchange occurs in this species.

Indexed as

Linkage DisequilibriumCandida albicansDNA, FungalDNA PrimersGenetic MarkersGenetic VariationGenotypeHumansPolymerase Chain ReactionPolymorphism, Single-Stranded ConformationalRecombination, GeneticDNA, FungalDNA PrimersGenetic Markers

Identifiers

PMID8901606
PMCPMC38016

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.