ArticleBiochemical genetics1996
Gene-specific universal mammalian sequence-tagged sites: application to the canine genome.
Article in Biochemical genetics, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Article
- Hybridization in Canids-A Case Study of Pampas Fox (Animals : an open access journal from MDPI · 2023Article
- Phylogenetic relationships between different raccoon dog (Nyctereutes procyonoides) populations based on four nuclear and Y genes.Genes & genomics · 2020Article
- Phylogenetic relationships of the New World titi monkeys (Callicebus): first appraisal of taxonomy based on molecular evidence.Frontiers in zoology · 2016Article
- Article
- Phylogeography of a Morphologically Cryptic Golden Mole Assemblage from South-Eastern Africa.PloS one · 2015Article
- Two Tickets to Paradise: Multiple Dispersal Events in the Founding of Hoary Bat Populations in Hawai'i.PloS one · 2015Article
- A molecular phylogeny of living primates.PLoS genetics · 2011Article
- Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences.Molecular phylogenetics and evolution · 2010Article
- Comparative genome mapping of the deer mouse (Peromyscus maniculatus) reveals greater similarity to rat (Rattus norvegicus) than to the lab mouse (Mus musculus).BMC evolutionary biology · 2008Article
- Multigene phylogeny of the Mustelidae: resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation.BMC biology · 2008Article
- Design factors that influence PCR amplification success of cross-species primers among 1147 mammalian primer pairs.BMC genomics · 2006Article
- Development of a deer mouse whole-genome radiation hybrid panel and comparative mapping of Mus chromosome 11 loci.Mammalian genome : official journal of the International Mammalian Genome Society · 2006Article
- Exon skipping in the KIT gene causes a Sabino spotting pattern in horses.Mammalian genome : official journal of the International Mammalian Genome Society · 2005Article
- Uprobe: a genome-wide universal probe resource for comparative physical mapping in vertebrates.Genome research · 2005Article
- The first-generation whole-genome radiation hybrid map in the horse identifies conserved segments in human and mouse genomes.Genome research · 2003Article
- A radiation hybrid map of the cat genome: implications for comparative mapping.Genome research · 2000Article
- A comparative gene map of the horse (Equus caballus).Genome research · 1999Article
- Extensive conservation of sex chromosome organization between cat and human revealed by parallel radiation hybrid mapping.Genome research · 1999Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We are developing a genetic map of the dog based partly upon markers contained within known genes. In order to facilitate the development of these markers, we have used polymerase chain reaction (PCR) primers designed to conserved regions of genes that have been sequenced in at least two species. We have refined the method for designing primers to maximize the number that produce successful amplifications across as many mammalian species as possible. We report the development of primer sets for 11 loci in detail: CFTR, COL10A1, CSFIR, CYP1A1, DCN1, FES, GHR, GLB1, PKLR, PVALB, and RB1. We also report an additional 75 primer sets in the appendices. The PCR products were sequenced to show that the primers amplify the expected canine genes. These primer sets thus define a class of gene-specific sequence-tagged sites (STSs). There are a number of uses for these STSs, including the rapid development of various linkage tools and the rapid testing of genomic and cDNA libraries for the presence of their corresponding genes. Six of the eleven gene targets reported in detail have been proposed to serve as "anchored reference loci" for the development of mammalian genetic maps [O'Brien, S. J., et al., Nat. Genet. 3:103, 1993]. The primer sets should cover a significant portion of the canine genome for the development of a linkage map. In order to determine how useful these primer sets would be for the other genome projects, we tested the 11 primer sets on the DNA from species representing five mammalian orders. Eighty-four percent of the gene-species combinations amplified successfully. We have named these primer sets "universal mammalian sequence-tagged sites" because they should be useful for many mammalian genome projects.
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