Evidence map›Paper›PMID 8863157›Full record

ArticleJournal of medical genetics1996

PAX genes and human neural tube defects: an amino acid substitution in PAX1 in a patient with spina bifida.

F A Hol, M P Geurds, S Chatkupt, Y Y Shugart, R Balling, C T Schrander-Stumpel, W G Johnson, B C Hamel, E C Mariman

Open access · bronzeAbstract read
In one paragraph

Article in Journal of medical genetics, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 74 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Exon sequencing of PAX3 and T (brachyury) in cases with spina bifida.Birth defects research. Part A, Clinical and molecular teratology · 2013
    Article
  8. Screening for novel PAX3 polymorphisms and risks of spina bifida.Birth defects research. Part A, Clinical and molecular teratology · 2007
    Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

F A HolDepartment of Human Genetics, University Hospital Nijmegen, The Netherlands.
M P Geurds
S Chatkupt
Y Y Shugart
R Balling
C T Schrander-Stumpel
W G Johnson
B C Hamel
E C Mariman
Radboud University Nijmegen · NLRutgers, The State University of New Jersey · USColumbia University · USHelmholtz Zentrum München · DE

Funding

MAPPING SUSCEPTIBILITY GENE LOCI FOR NEURAL DEFECTSR29NS029893 · NINDS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI CHATKUPT, SANSNEE · 1991 to 1995
–
NHGRI NIH HHS HG00008NINDS NIH HHS R29 NS29893
6 · The paper itself

Abstract

From studies in the mouse and from the clinical and molecular analysis of patients with type 1 Waardenburg syndrome, particular members of the PAX gene family are suspected factors in the aetiology of human neural tube defects (NTD). To investigate the role of PAX1, PAX3, PAX7, and PAX9, allelic association studies were performed in 79 sporadic and 38 familial NTD patients from the Dutch population. Sequence variation was studied by SSC analysis of the paired domain regions of the PAX1, PAX7, and PAX9 genes and of the complete PAX3 gene. In one patient with spina bifida, a mutation in the PAX1 gene was detected changing the conserved amino acid Gln to His at position 42 in the paired domain of the protein. The mutation was inherited through the maternal line from the unaffected grandmother and was not detected in 300 controls. In the PAX3 gene, variation was detected at several sites including a Thr/Lys amino acid substitution in exon 6. All alleles were present among patients and controls in about the same frequencies. However, an increased frequency of the rare allele of a silent polymorphism in exon 2 was found in NTD patients, but no significant association was observed (p = 0.06). No sequence variation was observed in the paired domain of the PAX7 and PAX9 genes. Our findings so far do not support a major role of the PAX genes examined in the aetiology of NTD. However, the detection of a mutation in PAX1 suggests that, in principle, this gene can act as a risk factor for human NTD.

Indexed as

Homeodomain ProteinsPolymorphism, Single-Stranded ConformationalAmino Acid SequenceDNA-Binding ProteinsDNA Mutational AnalysisFemaleGenes, HomeoboxGlutamineHumansMaleMolecular Sequence DataMuscle ProteinsNerve Tissue ProteinsNetherlandsNeural Tube DefectsPaired Box Transcription FactorsDNA-Binding ProteinsGlutamineHomeodomain ProteinsMuscle ProteinsNerve Tissue ProteinsPaired Box Transcription FactorsPAX1 transcription factorPAX3 protein, humanPax3 protein, mousePAX3 Transcription FactorPAX7 protein, humanPAX7 Transcription FactorPAX9 protein, humanPAX9 Transcription FactorTranscription Factors

Identifiers

PMID8863157
PMCPMC1050699
OpenAlexW2126204888

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.