ArticleGenetics1996
Details of retropositional genome dynamics that provide a rationale for a generic division: the distinct branching of all the pacific salmon and trout (Oncorhynchus) from the Atlantic salmon and trout (Salmo).
Article in Genetics, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
17 citing papers in PubMed, 83 citations in OpenAlex.
- Messenger RNA transcription levels of neuronal soluble N-ethylmaleimide-sensitive factor attachment protein receptor complex components in the olfactory nerve system of the anadromous Pacific salmon, masu salmon Oncorhynchus masou.Fish physiology and biochemistry · 2024Article
- Review
- Review
- Data representing applicability of developed growth hormone 1 (GH1) gene detection method for detecting Atlantic salmon (Data in brief · 2019Article
- Comparative Analysis of the Shared Sex-Determination Region (SDR) among Salmonid Fishes.Genome biology and evolution · 2015Article
- Reconsidering the phylogenetic utility of miRNA in animals.Proceedings of the National Academy of Sciences of the United States of America · 2014Article
- Identification of an ancient endogenous retrovirus, predating the divergence of the placental mammals.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013Article
- Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling.PloS one · 2012Article
- Seasonal variation of chromophore composition in the eye of the Japanese dace, Tribolodon hakonensis.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2005Article
- Salmonid opsin sequences undergo positive selection and indicate an alternate evolutionary relationship in oncorhynchus.Journal of molecular evolution · 2004Article
- Population dynamics of an Ac-like transposable element in self- and cross-pollinating arabidopsis.Genetics · 2001Article
- Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: hippopotamuses are the closest extant relatives of whales.Proceedings of the National Academy of Sciences of the United States of America · 1999Article
- SINEs of the perfect character.Proceedings of the National Academy of Sciences of the United States of America · 1999Review
- Determining and dating recent rodent speciation events by using L1 (LINE-1) retrotransposons.Proceedings of the National Academy of Sciences of the United States of America · 1998Article
- Molecular evidence from retroposons that whales form a clade within even-toed ungulates.Nature · 1997Article
- Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Salmonid species contain numerous short interspersed repetitive elements (SINEs), known collectively as the HpaI family, in their genomes. Amplification and successive integration of individual SINEs into the genomes have occurred during the evolution of salmonids. We reported previously a strategy for determining the phylogenetic relationships among the Pacific salmonids in which these SINEs were used as temporal landmarks of evolution. Here, we provide evidence for extensive genomic rearrangements that involved retropositions and deletions in a common ancestor of all the Pacific salmon and trout. Our results provide genetic support for the recent phylogenetic reassignment of steelhead and related species from the genus Salmo to the genus Oncorhynchus. Several other informative loci identified by insertions of HpaI SINEs have been isolated, and previously proposed branching orders of the Oncorhynchus species have been confirmed. The authenticity of our phylogenetic tree is supported both by the isolation of more than two informative loci per branching point and by the congruence of all our data, which suggest that the period between successive speciations was sufficiently long for each SINE that had been amplified in the original species to become fixed in all individuals of that species.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.