Evidence map›Paper›PMID 8754843›Full record

ArticleMolecular and cellular biology1996

Effects of nonsense mutations on nuclear and cytoplasmic adenine phosphoribosyltransferase RNA.

O Kessler, L A Chasin

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
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  6. Article
  7. Nonsense codons trigger an RNA partitioning shift.The Journal of biological chemistry · 2009
    Article
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  15. Article
  16. Nonsense-mediated decay of human HEXA mRNA.Molecular and cellular biology · 2001
    Article
  17. Article
  18. Multiple splicing defects in an intronic false exon.Molecular and cellular biology · 2000
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

O KesslerDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
L A Chasin
Columbia University · US

Funding

MAMMALIAN CELL GENETIC STUDIES OF PREMRNA SPLICINGR01GM022629 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI CHASIN, LAWRENCE A · 1985 to 1997
–
NIGMS NIH HHS GM 22629
6 · The paper itself

Abstract

We have analyzed Chinese hamster ovary (CHO) cell mutants bearing nonsense codons in four of the five exons of the adenine phosphoribosyltransferase (aprt) gene and have found a pattern of mRNA reduction similar to that seen in systems studied previously: a decrease in steady-state mRNA levels of 5- to 10-fold for mutations in exons 1, 2, and 4 but little effect for mutations in the 3'-most exon (exon 5). Nuclear aprt mRNA levels showed a similar decrease. Nonsense-containing aprt mRNA decayed at the same rate as wild-type mRNA in these cell lines after inhibition of transcription with actinomycin D. Nonsense-containing aprt mRNA is associated with polysomes, ruling out a model in which stable residual mRNA escapes degradation by avoiding translation initiation. A tetracycline-responsive form of the aprt gene was used to compare the stability of nonsense-containing and wild-type aprt mRNAs without globally inhibiting transcription. In contrast to measurements made in the presence of actinomycin D, after inhibition of aprt transcription with tetracycline, a nonsense-mediated destabilization of aprt mRNA was indeed demonstrable. The increased rate of decay of cytoplasmic aprt mRNA seen here could account for the nonsense-mediated reduction in steady-state levels of aprt mRNA. However, the low levels of nonsense-bearing aprt mRNA in the nucleus suggest a sensibility of mRNA to translation or translatability before it exits that compartment. Quantitation of the steady-state levels of transcripts containing introns revealed no accumulation of partially spliced aprt RNA and hence no indication of nonsense-mediated aberrancies in splicing. Our results are consistent with a model in which translation facilitates the export of mRNA through a nuclear pore. However, the mechanism of this intriguing nucleocytoplasmic communication remains to be determined.

Indexed as

Point MutationAdenine PhosphoribosyltransferaseAnimalsBase SequenceCell NucleusCHO CellsCricetinaeCytoplasmDNA PrimersGene Expression Regulation, EnzymologicMolecular Sequence DataNucleic Acid PrecursorsPeptide Chain Termination, TranslationalPolyribosomesProtein BiosynthesisRNA, MessengerAdenine PhosphoribosyltransferaseDNA PrimersNucleic Acid PrecursorsRNA, Messenger

Identifiers

PMID8754843
PMCPMC231441
OpenAlexW2133755885

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.