Evidence map›Paper›PMID 8730098›Full record

ArticleMolecular biology of the cell1996

Contrasting effects of the SATB1 core nuclear matrix attachment region and flanking sequences of the keratin 18 gene in transgenic mice.

N Neznanov, T Kohwi-Shigematsu, R G Oshima

Open access · greenAbstract readComparative Study
In one paragraph

Article in Molecular biology of the cell, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

N NeznanovBurnham Institute, La Jolla, California 92037, USA.
T Kohwi-Shigematsu
R G Oshima
Sanford Burnham Prebys Medical Discovery Institute · US

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI Michael Jackson · 1985 to 2026
$107.2M
Studies on gene regulation by chromatin organizationR37CA039681 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KOHWI-SHIGEMATSU, TERUMI · 2002 to 2015
$9.8M
DEVELOPMENTAL CONTROL OF HUMAN CYTOKERATIN EXPRESSIONR01CA042302 · NCI · BURNHAM INSTITUTE FOR MEDICAL RESEARCH · PI OSHIMA, ROBERT G · 1986 to 2002
$1.4M
STUDIES ON NON B DNA STRUCTURE WITH CHEMICAL CARCINOGENSR01CA039681 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KOHWI-SHIGEMATSU, TERUMI · 1985 to 2001
$1.0M
NCI NIH HHS CA-30199NCI NIH HHS CA-39681NCI NIH HHS CA-42302
6 · The paper itself

Abstract

The 2.3 kb and 3.5 kb of DNA that flank the human keratin 18 (K18) gene and synthetic nuclear matrix attachment regions (MAR) composed of the binding sites for the SATB1 nuclear protein were fused to a reporter gene that utilizes the mouse metallothionein promoter and the human growth hormone gene (MThGH). Transgenic mice were generated from both constructions and the control MThGH gene to test K18 and SATB1 MAR sequences for the ability to insulate the reporter gene from integration site-specific position effects. The MThGH control gene was variably expressed in brain, heart, intestine, kidney, liver, and testes, confirming previous studies. In contrast, the MThGH gene insulated by the K18 flanking sequences was expressed in the same tissues of four independent transgenic animals at levels correlated with the copy number except for intestine. The average level of expression on a per gene basis of the K18 insulated gene was from 9- to 49-fold higher than the control. The MThGH gene linked to the SATB1 MAR sequences was completely repressed in the brains and kidneys of all six transgenic mice. However, expression was nearly as efficient in testes as the K18-insulated gene. Both the SATB1 MAR and the K18 flanking sequences confer position-independent transcriptional status on the reporter gene in some or many tissues. However, the effects are stimulatory for the K18 elements and generally suppressive for the SATB1 MAR elements.

Indexed as

Gene Expression RegulationMatrix Attachment Region Binding ProteinsAnimalsBase SequenceBlotting, NorthernBlotting, SouthernDNADNA-Binding ProteinsFemaleGenes, ReporterGrowth HormoneHumansKeratinsMaleMetallothioneinMiceDNADNA-Binding ProteinsGrowth HormoneKeratinsMatrix Attachment Region Binding ProteinsMetallothioneinRecombinant Fusion ProteinsSATB1 protein, human

Identifiers

PMID8730098
PMCPMC275908
OpenAlexW2153255519

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.