ArticleProceedings of the National Academy of Sciences of the United States of America1996
Creation of a novel protein-coding region at the RNA level in black pine chloroplasts: the pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms.
Article in Proceedings of the National Academy of Sciences of the United States of America, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.
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53 citing papers in PubMed, 122 citations in OpenAlex.
- Comparative chloroplast genomics of sixFrontiers in plant science · 2026Article
- Synthetic Pentatricopeptide Repeat Proteins: Building a Toolkit for Precise RNA Control.International journal of molecular sciences · 2025Review
- Analysis of the RNA Editing Sites and Orthologous Gene Function of Transcriptome and Chloroplast Genomes in the Evolution of FiveInternational journal of molecular sciences · 2023Article
- A Comprehensive Evolutionary Study of Chloroplast RNA Editing in Gymnosperms: A Novel Type of G-to-A RNA Editing Is Common in Gymnosperms.International journal of molecular sciences · 2022Article
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- Genome-Wide Identification and Characterization of RNA/DNA Differences Associated withInternational journal of molecular sciences · 2022Article
- De novo assembly of the complete mitochondrial genome of sweet potato (Ipomoea batatas [L.] Lam) revealed the existence of homologous conformations generated by the repeat-mediated recombination.BMC plant biology · 2022Article
- Comprehensive analysis of plastid gene expression during fruit development and ripening of kiwifruit.Plant cell reports · 2022Article
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- The complete plastid genome sequence of the enigmatic moss, Takakia lepidozioides (Takakiopsida, Bryophyta): evolutionary perspectives on the largest collection of genes in mosses and the intensive RNA editing.Plant molecular biology · 2021Article
- Genome Characterization, Comparison and Phylogenetic Analysis of Complete Mitochondrial Genome ofLife (Basel, Switzerland) · 2021Article
- Characterization and Analysis of the Mitochondrial Genome of Common Bean (International journal of molecular sciences · 2020Article
- RNA editing in the chloroplast of Asian Palmyra palm (Borassus flabellifer).Genetics and molecular biology · 2020Article
- Comparative Analyses of Chloroplast Genomes of Cucurbitaceae Species: Lights into Selective Pressures and Phylogenetic Relationships.Molecules (Basel, Switzerland) · 2018Article
- The Complete Plastome Sequence of an Antarctic Bryophyte Sanionia uncinata (Hedw.) Loeske.International journal of molecular sciences · 2018Article
- Complete chloroplast genome sequence and comparative analysis of loblolly pine (Pinus taeda L.) with related species.PloS one · 2018Article
- Whole plastid transcriptomes reveal abundant RNA editing sites and differential editing status in Phalaenopsis aphrodite subsp. formosana.Botanical studies · 2017Article
- Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plantPeerJ · 2017Article
- Analysis of the Complete Mitochondrial Genome Sequence of the Diploid CottonBioMed research international · 2016Article
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The phenomenon of RNA editing has been found to occur in chloroplasts of several angiosperm plants. Comparative analysis of the entire nucleotide sequence of a gymnosperm [Pinus thunbergii (black pine)] chloroplast genome allowed us to predict several potential editing sites in its transcripts. Forty-nine such sites from 14 genes/ORFs were analyzed by sequencing both cDNAs from the transcripts and the corresponding chloroplast DNA regions, and 26 RNA editing sites were identified in the transcripts from 12 genes/ORFs, indicating that chloroplast RNA editing is not restricted to angiosperms but occurs in the gymnosperm, too. All the RNA editing events are C-to-U conversions; however, many new codon substitutions and creation of stop codons that have not so far been reported in angiosperm chloroplasts were observed. The most striking is that two editing events result in the creation of an initiation and a stop codon within a single transcript, leading to the formation of a new reading frame of 33 codons. The predicted product is highly homologous to that deduced from the ycf7 gene (ORF31), which is conserved in the chloroplast genomes of many other plant species.
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